FC932130

Overview
NameFC932130
Unique NameFC932130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_PICST (Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS--TRGDPSGTAGRSFREEIHKKI 524
            L  +LP  +   V   A  + G  +    L+      ++            +++ SRM  IAPNL+A+VG  V A+L+  AG L++LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R DS     D SG  G   R ++  ++
Sbjct:  223 LSEILPEELEEQVKSAAEVSMGTEITAIDLENIRALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTALVGELVGARLIAHAGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEERDDSGDFGLEVRAKVESRL 398          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_DEBHA (Nucleolar protein 58 OS=Debaryomyces hansenii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKI 524
            L  +LP      V   A  + G  + +  L+      ++            +++ SRM  IAPNL+A+VG  V A+L+  +G L++LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R DS     D SG  G S R ++  ++
Sbjct:  223 LSEILPEEAEEQVKSAAEVSMGTEITDIDLENIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTALVGELVGARLIAHSGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEDRDDSGDFGLSVRTKVESRL 398          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 45/140 (32.14%), Postives = 68/140 (48.57%), Query Frame = 3
Query:  105 DACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 524
            + CD+            D+++SRM+ IAPNL+A+VG  V A+L+   G L  LAK P   VQ+LGA+K       T  +  + G +    +     P  + +  R LAAKS LA R D+       T G   R ++  ++
Sbjct:  254 ELCDQVLSLAEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLKLEARL 393          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_EMENI (Nucleolar protein 58 OS=Emericella nidulans GN=nop58 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   V   A  + G  + ED L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LAEILPEEIEAAVKAAADRSMGTEISEDDLENIQALAEQVVGFSEYRSQLAGYITARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTLQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_DICDI (Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 3
Query:   12 LLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            +LP  +   V   A  + G  +  + L      CD+            ++++SRM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K       T  +  + G +   +I        + +  R+LAAK+ L+AR D+
Sbjct:  227 ILPEEVAEEVKEAAQISMGTEISPEDLDHIFALCDQFLSIQAYHTELTEYLKSRMEAIAPNLTILVGEIVGARLICRAGSLMNLAKYPASTIQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMSRVLAAKAALSARFDA 376          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_CANAL (Nucleolar protein 58 OS=Candida albicans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 51/178 (28.65%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVD--STRGDPSGTAGRSFREEIHKKIEK 530
            L  +LP  +   V   A  + G  + ED L       ++            +++ SRM  IAPNL+A+VG  V A+L+  AG L++LAK PA  VQ+LGA+K       T     + G +    +        + R  R LAAK+ ++ R D      D S   G   R ++  ++ +
Sbjct:  223 LSEILPEEVEEQVKAAAEVSMGTEITEDDLNNIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTAMVGELVGARLIAHAGSLTSLAKAPASTVQILGAEKALFRALKTKHDTPKYGIIYHASLVGQASGKNKGRIARTLAAKAAVSLRYDCFDEERDESDDFGLENRAKVEGRLSQ 400          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_RAT (Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 47/174 (27.01%), Postives = 79/174 (45.40%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 524
            L   L   +   V   A  + G  + E+ +   +  C +            +++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K       +     + G +    +   T P  + +  R+LAAK+ LA R D+   D S   G   R ++  ++
Sbjct:  222 LSEFLSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGAENRAKLEARL 395          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_PICGU (Nucleolar protein 58 OS=Pichia guilliermondii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 49/176 (27.84%), Postives = 82/176 (46.59%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVD--STRGDPSGTAGRSFREEIHKKI 524
            L  +LP  +   V   A  + G  +    L+      ++            +++ +RM  IAPNL+A+VG  + A+L+  AG L++L+K PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R D  S   D SG  G S R ++  ++
Sbjct:  223 LSEILPEEMEEKVKTAAEVSMGTEITPIDLENIKALAEQIVDFAAYREQLSNYLSARMKAIAPNLTALVGELIGARLIAHAGSLTSLSKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVALRYDSLSEERDDSGDFGFSVRAKVESRL 398          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: Y694_METJA (Uncharacterized NOP5 family protein MJ0694 OS=Methanocaldococcus jannaschii GN=MJ0694 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 50/176 (28.41%), Postives = 85/176 (48.30%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEK 530
            L+ +LPS +   ++  A  + G  L +  L   +   +             +++E  M+  APN++ + G ++ A+L+G AGGL  LAKMPA  +Q+LGA+K   A         + G +    + Q +P   R +  R LA K  +AAR D   GD          E+++K++E+
Sbjct:  186 LKKILPSKLAGKIAEAAKNSMGGELEDYDLDVIVKFAEEINHLYEKRKELYNYLEKLMNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEKALFAHLRMGVEPPKHGIIYNHPLIQGSPHWQRGKIARALACKLAIAARADYV-GD---YIADELLEKLNKRVEE 357          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_VANPO (Nucleolar protein 58 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 49/178 (27.53%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 530
            L  +LP  +   V   A  + G  + E  L       D+            +++ SRM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  223 LSEILPEEVEERVKTAAEVSMGTEITETDLDNIKALADQIVDFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVENRLSQ 400          
The following BLAST results are available for this feature:
BLAST of FC932130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NOP58_PICST1.022e-1328.98Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 P... [more]
NOP58_DEBHA1.022e-1328.98Nucleolar protein 58 OS=Debaryomyces hansenii GN=N... [more]
NOP5A_ARATH1.334e-1332.14Probable nucleolar protein 5-1 OS=Arabidopsis thal... [more]
NOP58_EMENI1.334e-1330.07Nucleolar protein 58 OS=Emericella nidulans GN=nop... [more]
NOP58_DICDI1.334e-1330.67Nucleolar protein 58 OS=Dictyostelium discoideum G... [more]
NOP58_CANAL1.743e-1328.65Nucleolar protein 58 OS=Candida albicans GN=NOP58 ... [more]
NOP58_RAT2.276e-1327.01Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58... [more]
NOP58_PICGU2.276e-1327.84Nucleolar protein 58 OS=Pichia guilliermondii GN=N... [more]
Y694_METJA3.882e-1328.41Uncharacterized NOP5 family protein MJ0694 OS=Meth... [more]
NOP58_VANPO3.882e-1327.53Nucleolar protein 58 OS=Vanderwaltozyma polyspora ... [more]

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Properties
Property NameValue
Genbank descriptionC34205A01EF PostHarveN Citrus clementina cDNA clone C34205A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932130 ID=FC932130; Name=FC932130; organism=Citrus clementina; type=EST; length=688bp
ATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTGGTGTCCGTCACG
GCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGCCCTTCAAAAGAC
AATTGATGCATGTGATCGAGCTCTTGCACTTGGTGCAGCAAAGAAGAAGG
TCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCGCCCAATCTATCT
GCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGGAACGGCTGGTGG
TCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTCAGCTTCTTGGCG
CAAAGAAAAAGAATCTTGCTGGTTTTTCTACTGCAACATCTCAATTCCGT
GTAGGTTATCTTGAGCAGACAGAGATATTTCAAAGTACACCTCCACCTCT
AAGGATGCGTGCCTGCCGACTCTTGGCTGCAAAATCAACACTTGCAGCAC
GTGTTGATTCTACTAGAGGAGATCCTTCTGGAACTGCTGGGAGGTCTTTC
AGAGAAGAGATTCACAAGAAGATTGAAAAGTGGCAAGAGCCTCCTCCTGC
AAAGCAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGA
GGGGTGGTCGACGGTTAAGGAAGATGAAAGAAGATATGCTGTAACAGATA
TGAGAAAACTGGCTAATAGAATGCTATTTGGTGTACCT
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