FC932130

Overview
NameFC932130
Unique NameFC932130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_CANGA (Nucleolar protein 58 OS=Candida glabrata GN=NOP58 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 50/175 (28.57%), Postives = 79/175 (45.14%), Query Frame = 3
Query:   12 LLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 530
            +LP  I   V   A  + G  + +  L       D+            +++ SRM  IAPNL+ +VG  V A+L+  AG L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ +A R D+     D SG  G   R ++  ++ +
Sbjct:  226 ILPEEIEERVKAAAEVSMGTEITDVDLINIRALADQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHAGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGRNKGKIARVLAAKAAVALRYDALAEDRDDSGDIGLEVRAKVENRLSQ 400          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_MOUSE (Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/174 (26.44%), Postives = 79/174 (45.40%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 524
            L   L   +   V   A  + G  + E+ +   +  C +            +++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K       +     + G +    +   + P  + +  R+LAAK+ LA R D+   D S   G   R ++  ++
Sbjct:  222 LSEFLSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQSSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGIENRAKLEARL 395          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_YEAST (Nucleolar protein 56 OS=Saccharomyces cerevisiae GN=NOP56 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 43/169 (25.44%), Postives = 79/169 (46.75%), Query Frame = 3
Query:   21 SAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 527
            S I   V   A  + G+ + E  ++       R            D++  +M  +APNLS ++G  + A+L+  AG L+ L+K  A  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D+   +PS   G   ++++ +++E
Sbjct:  245 SGIAQRVIDNARISMGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKTKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFGSVLKKQVEQRLE 413          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_ASPFU (Nucleolar protein 58 OS=Aspergillus fumigatus GN=nop58 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 43/153 (28.10%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  +   V   A  + G  + ++ L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LTEILPEELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_ASPCL (Nucleolar protein 58 OS=Aspergillus clavatus GN=nop58 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  +   V   A  + G  + +D L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LAEILPEELEGPVKAAADRSMGTEISQDDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGIRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_AJECN (Nucleolar protein 58 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 48/169 (28.40%), Postives = 73/169 (43.20%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 509
            L  +LP  I  VV   A  + G  +  + L       +              ++ +RM+ IAPNL+A+VG  V A+L+  AG L  L+K PA  +Q+LGA+K       T     + G +    +        + +  R LAAK+ +  RVD+    P    G    EE
Sbjct:  224 LAEILPEEIEAVVKAAADRSMGTEISNEDLDNIQALAEEVIGFSTYRQQLASYLAARMTAIAPNLTALVGELVGARLIAHAGSLVNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARYLAAKAAIGLRVDALTDWPVDADGNEPTEE 392          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_YARLI (Nucleolar protein 58 OS=Yarrowia lipolytica GN=NOP58 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  +   + V A  + G  + E  L+      D+            +++ +RM+ IAPNL+A+VG  V A+L+  +G L  LAK PA  VQ+LGA+K       T     + G +    +        + +  R+LAAK++++ R D+
Sbjct:  223 LSEVLPEEVEAALKVAAEVSMGTEITEFDLENIQCLADQVIDFAEYREQLSNYLNARMAAIAPNLTALVGELVGARLIAHSGSLVNLAKAPASTVQILGAEKALFRALKTKHDTPKYGIIYHASLIGQASGKNKGKIARMLAAKASVSMRYDA 375          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_ASPTN (Nucleolar protein 58 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nop58 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   V   A  + G  + ++ L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LAEILPEEIEGAVKAAADRSMGTEISQEDLENIQALAEQVVGFSEYRQQLASYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTLQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_NEOFI (Nucleolar protein 58 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=nop58 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 43/153 (28.10%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  +   V   A  + G  + ++ L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LAEILPEELEGTVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_ASHGO (Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 48/175 (27.43%), Postives = 79/175 (45.14%), Query Frame = 3
Query:   12 LLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 530
            +LP  I   V   A  + G  + +  L       ++            +++ SRM  IAPNL+ +VG  V A+L+  AG L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  226 ILPEEIEERVKSAAEVSMGTEITQVDLDNIKSLAEQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHAGSLVSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVESRLSQ 400          
The following BLAST results are available for this feature:
BLAST of FC932130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NOP58_CANGA8.648e-1328.57Nucleolar protein 58 OS=Candida glabrata GN=NOP58 ... [more]
NOP58_MOUSE1.129e-1226.44Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1... [more]
NOP56_YEAST1.129e-1225.44Nucleolar protein 56 OS=Saccharomyces cerevisiae G... [more]
NOP58_ASPFU1.475e-1228.10Nucleolar protein 58 OS=Aspergillus fumigatus GN=n... [more]
NOP58_ASPCL1.475e-1228.76Nucleolar protein 58 OS=Aspergillus clavatus GN=no... [more]
NOP58_AJECN1.475e-1228.40Nucleolar protein 58 OS=Ajellomyces capsulata (str... [more]
NOP58_YARLI1.927e-1228.76Nucleolar protein 58 OS=Yarrowia lipolytica GN=NOP... [more]
NOP58_ASPTN1.927e-1228.76Nucleolar protein 58 OS=Aspergillus terreus (strai... [more]
NOP58_NEOFI2.516e-1228.10Nucleolar protein 58 OS=Neosartorya fischeri (stra... [more]
NOP58_ASHGO2.516e-1227.43Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 P... [more]

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Properties
Property NameValue
Genbank descriptionC34205A01EF PostHarveN Citrus clementina cDNA clone C34205A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932130 ID=FC932130; Name=FC932130; organism=Citrus clementina; type=EST; length=688bp
ATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTGGTGTCCGTCACG
GCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGCCCTTCAAAAGAC
AATTGATGCATGTGATCGAGCTCTTGCACTTGGTGCAGCAAAGAAGAAGG
TCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCGCCCAATCTATCT
GCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGGAACGGCTGGTGG
TCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTCAGCTTCTTGGCG
CAAAGAAAAAGAATCTTGCTGGTTTTTCTACTGCAACATCTCAATTCCGT
GTAGGTTATCTTGAGCAGACAGAGATATTTCAAAGTACACCTCCACCTCT
AAGGATGCGTGCCTGCCGACTCTTGGCTGCAAAATCAACACTTGCAGCAC
GTGTTGATTCTACTAGAGGAGATCCTTCTGGAACTGCTGGGAGGTCTTTC
AGAGAAGAGATTCACAAGAAGATTGAAAAGTGGCAAGAGCCTCCTCCTGC
AAAGCAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGA
GGGGTGGTCGACGGTTAAGGAAGATGAAAGAAGATATGCTGTAACAGATA
TGAGAAAACTGGCTAATAGAATGCTATTTGGTGTACCT
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