FC932130

Overview
NameFC932130
Unique NameFC932130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 39/153 (25.49%), Postives = 76/153 (49.67%), Query Frame = 3
Query:   66 GKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 524
            G+ + E  L+  +   +R            +++  +M+ +APNL+ ++G  V A+L+  AG L+ L+K PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D+    P+   G+  R ++ +++
Sbjct:  256 GQDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPNLAELIGEMVGARLISHAGSLTNLSKCPASTVQILGAEKALFRALKTRGNTPKYGIIYHSSFIGKAGAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERL 408          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_ASPOR (Nucleolar protein 58 OS=Aspergillus oryzae GN=nop58 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  +   V   A  + G  + E+ L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LAEILPEELEGSVKAAADRSMGTEISEEDLENIQALAEQVVGFTEYRQQLAGYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTLQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGIRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_ASPNC (Nucleolar protein 58 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=nop58 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   V   A  + G  + ++ L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  225 LAEILPEEIEGAVKAAADRSMGTEISQEDLEHIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTLQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_YEAST (Nucleolar protein 58 OS=Saccharomyces cerevisiae GN=NOP58 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 47/178 (26.40%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 530
            L  +LP  I   V   A  + G  + +  L       ++            +++ +RM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  223 LSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQ 400          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_YEAS7 (Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 47/178 (26.40%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 530
            L  +LP  I   V   A  + G  + +  L       ++            +++ +RM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  223 LSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQ 400          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_SCLS1 (Nucleolar protein 58 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 43/153 (28.10%), Postives = 69/153 (45.10%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   +   A  + G  + E+ L       ++             ++ +RM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK+ +  RVD+
Sbjct:  225 LADILPEEIEAAIKAAAEVSMGTEITEEDLDNIKLLAEQVVGFTEYRQQLSSYLSARMQAIAPNLTELVGELVGARLIAHAGSLMNLAKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQATGKNKGKIARMLAAKAAIGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_NEUCR (Nucleolar protein 58 OS=Neurospora crassa GN=nop-58 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/153 (28.76%), Postives = 70/153 (45.75%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   V   A  + G  + E+ LQ      +R            D++E+RM  IAPN++ +VG+ V A+L+  AG +  LAK P   +Q+LGA+K       T  +  + G +    +        + +  R LA+K  L  R D+
Sbjct:  225 LSEILPHEIEAAVKAAADISMGTEVSEEDLQNIKYLAERVIDYSVYRKQLSDYLENRMRAIAPNMTELVGALVGARLIAHAGSVMNLAKNPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLVGQASGANKGKMARQLASKVALGVRTDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 41/140 (29.29%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  105 DACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 524
            + CD+            D ++++M+ IAPNL+A+VG  V A+L+   G L  L+K+P   +Q+LGA+K       T  +  + G +    + +   P  + +  R LAAKS LA R D+       T G   R ++  ++
Sbjct:  226 ELCDQVLSIAEDKTLLCDDLKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARL 365          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_COCIM (Nucleolar protein 58 OS=Coccidioides immitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 43/153 (28.10%), Postives = 72/153 (47.06%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   V   A+ + G  +  + L+      ++             ++ +RM+ IAPNL+A+VG  V A+L+  AG L  L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK+ +  RVD+
Sbjct:  225 LSEILPEEIEGAVKAAANRSMGTDISNEDLENIQCLAEQVVGFAEYRQQLASYLTARMTAIAPNLTALVGELVGARLIAHAGSLVNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKAAIGLRVDA 377          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_BOTFB (Nucleolar protein 58 OS=Botryotinia fuckeliana (strain B05.10) GN=nop58 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 42/153 (27.45%), Postives = 69/153 (45.10%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            L  +LP  I   +   A  + G  + ++ L       ++             ++ +RM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK+ +  RVD+
Sbjct:  225 LADILPEEIETAIKAAAEVSMGTEITQEDLDNIKLLAEQVVGFTEYRQQLSSYLSARMQAIAPNLTELVGDLVGARLIAHAGSLMNLAKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQATGKNKGKIARMLAAKAAIGLRVDA 377          
The following BLAST results are available for this feature:
BLAST of FC932130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NOP56_SCHPO2.516e-1225.49Nucleolar protein 56 OS=Schizosaccharomyces pombe ... [more]
NOP58_ASPOR3.286e-1228.76Nucleolar protein 58 OS=Aspergillus oryzae GN=nop5... [more]
NOP58_ASPNC3.286e-1228.76Nucleolar protein 58 OS=Aspergillus niger (strain ... [more]
NOP58_YEAST4.292e-1226.40Nucleolar protein 58 OS=Saccharomyces cerevisiae G... [more]
NOP58_YEAS74.292e-1226.40Nucleolar protein 58 OS=Saccharomyces cerevisiae (... [more]
NOP58_SCLS14.292e-1228.10Nucleolar protein 58 OS=Sclerotinia sclerotiorum (... [more]
NOP58_NEUCR5.606e-1228.76Nucleolar protein 58 OS=Neurospora crassa GN=nop-5... [more]
NOP5C_ARATH7.321e-1229.29Putative nucleolar protein 5-3 OS=Arabidopsis thal... [more]
NOP58_COCIM7.321e-1228.10Nucleolar protein 58 OS=Coccidioides immitis GN=NO... [more]
NOP58_BOTFB9.562e-1227.45Nucleolar protein 58 OS=Botryotinia fuckeliana (st... [more]

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Properties
Property NameValue
Genbank descriptionC34205A01EF PostHarveN Citrus clementina cDNA clone C34205A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932130 ID=FC932130; Name=FC932130; organism=Citrus clementina; type=EST; length=688bp
ATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTGGTGTCCGTCACG
GCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGCCCTTCAAAAGAC
AATTGATGCATGTGATCGAGCTCTTGCACTTGGTGCAGCAAAGAAGAAGG
TCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCGCCCAATCTATCT
GCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGGAACGGCTGGTGG
TCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTCAGCTTCTTGGCG
CAAAGAAAAAGAATCTTGCTGGTTTTTCTACTGCAACATCTCAATTCCGT
GTAGGTTATCTTGAGCAGACAGAGATATTTCAAAGTACACCTCCACCTCT
AAGGATGCGTGCCTGCCGACTCTTGGCTGCAAAATCAACACTTGCAGCAC
GTGTTGATTCTACTAGAGGAGATCCTTCTGGAACTGCTGGGAGGTCTTTC
AGAGAAGAGATTCACAAGAAGATTGAAAAGTGGCAAGAGCCTCCTCCTGC
AAAGCAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGA
GGGGTGGTCGACGGTTAAGGAAGATGAAAGAAGATATGCTGTAACAGATA
TGAGAAAACTGGCTAATAGAATGCTATTTGGTGTACCT
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