FC932130

Overview
NameFC932130
Unique NameFC932130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 44/159 (27.67%), Postives = 75/159 (47.17%), Query Frame = 3
Query:   51 ASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 527
            A  + G  + +  L   +   DR             ++  +M  IAPNLSA+VG  + AKL+  AG L++LAK PA  VQ+LGA+K             + G +       S+    + R  R L+ K ++A R+D    +P+   G + ++++  +I+
Sbjct:  247 AKASMGGDISQIDLVTVMHFADRVISLDEYRTNLTQYLAKKMQDIAPNLSALVGDRIGAKLISRAGSLTSLAKYPASTVQILGAEKALFRAMKVRGKTPKYGIIFNASAV-SSETKNKGRIARCLSNKISIATRIDCFSDNPTAKFGVALKQQVADRIK 404          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_KLULA (Nucleolar protein 58 OS=Kluyveromyces lactis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  156 DFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 530
            +++ SRM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  274 NYLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVESRLSQ 400          
The following BLAST results are available for this feature:
BLAST of FC932130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NOP56_DICDI2.130e-1127.67Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]
NOP58_KLULA2.782e-1131.50Nucleolar protein 58 OS=Kluyveromyces lactis GN=NO... [more]

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Properties
Property NameValue
Genbank descriptionC34205A01EF PostHarveN Citrus clementina cDNA clone C34205A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932130 ID=FC932130; Name=FC932130; organism=Citrus clementina; type=EST; length=688bp
ATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTGGTGTCCGTCACG
GCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGCCCTTCAAAAGAC
AATTGATGCATGTGATCGAGCTCTTGCACTTGGTGCAGCAAAGAAGAAGG
TCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCGCCCAATCTATCT
GCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGGAACGGCTGGTGG
TCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTCAGCTTCTTGGCG
CAAAGAAAAAGAATCTTGCTGGTTTTTCTACTGCAACATCTCAATTCCGT
GTAGGTTATCTTGAGCAGACAGAGATATTTCAAAGTACACCTCCACCTCT
AAGGATGCGTGCCTGCCGACTCTTGGCTGCAAAATCAACACTTGCAGCAC
GTGTTGATTCTACTAGAGGAGATCCTTCTGGAACTGCTGGGAGGTCTTTC
AGAGAAGAGATTCACAAGAAGATTGAAAAGTGGCAAGAGCCTCCTCCTGC
AAAGCAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGA
GGGGTGGTCGACGGTTAAGGAAGATGAAAGAAGATATGCTGTAACAGATA
TGAGAAAACTGGCTAATAGAATGCTATTTGGTGTACCT
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