FC932132

Overview
NameFC932132
Unique NameFC932132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932132 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.750e-51
Identity = 106/199 (53.27%), Postives = 135/199 (67.84%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEK 675
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  LQRKR + A K
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALK 194          
BLAST of FC932132 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 107/202 (52.97%), Postives = 129/202 (63.86%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQR 684
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+ R++A  A+K  R
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAAR 199          
BLAST of FC932132 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 95/201 (47.26%), Postives = 119/201 (59.20%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEK 675
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R +AR A+K
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKK 194          
BLAST of FC932132 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.670e-38
Identity = 94/201 (46.77%), Postives = 118/201 (58.71%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEK 675
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R +AR A+K
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKK 194          
BLAST of FC932132 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 60/195 (30.77%), Postives = 99/195 (50.77%), Query Frame = 1
Query:  127 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNL-SKEDDVRKYVNTYRRT---------FTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQ 681
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  +E +V  Y+    ++              GK++ +  + +  +  + L+RKR    E+K+
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQERREQIMKIRLERKRILEEERKE 194          
The following BLAST results are available for this feature:
BLAST of FC932132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASHGO2.750e-5153.2740S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI9.781e-4952.9740S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA4.119e-3947.2640S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN2.670e-3846.7740S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU1.166e-1730.7740S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC34205A03EF PostHarveN Citrus clementina cDNA clone C34205A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932132 ID=FC932132; Name=FC932132; organism=Citrus clementina; type=EST; length=685bp
ATAATAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCAC
TGGGTTAGTCTGATAGCCGCAGAGCAAAATGAAGTTCAATATTGCAAATC
CCACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTC
CGAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCT
TGGGGAGGAGTTCAAAGGTTACGTCTTTAAGATAATGGGAGGCTGTGACA
AGCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGT
CTTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGA
TGGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATC
TCTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCT
GGACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTC
AAAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGT
ATGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTT
AGCAAGGCTCCTAAAATTCAGAGGTTGGTGACTCCTTTGACTTTGCAGAG
GAAGCGCGCCAGAATTGCTGAGAAGAAGCAGAGAA
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