FC932133

Overview
NameFC932133
Unique NameFC932133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 92/184 (50.00%), Postives = 123/184 (66.85%), Query Frame = 1
Query:  133 SRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            SR   +L++ + +Q+S +  S P + S+      +  + +RTMFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP V +DGGDI +  +
Sbjct:   33 SRGFVHLTSSV-AQSSAIHVSTPSTPSL------MLIMGKRTMFIQTQDTPNPESLKFLPGVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSDFITISKEEAAEWGLIKPEVFAVIMDFFASGLPILHEARNNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMSY 207          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.165e-40
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  241 RVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            ++ RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFG DFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   69 QISRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGDFITISKEESGEWGLIKPEVFAVIMDFFASGLPVIHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 214          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 1
Query:  253 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            R MFIQTQ TPNP SL F PG  V+  G+  DFP+   A  SPLAK L+ V+G+  VFFG+DFIT++K E   W L+KPE+FA IMDF++SG P+  +S   A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   65 RNMFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGADFITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 206          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROPS (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:  244 VQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEY 672
            + +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I +DD ETV MIKELL+TRIRP V +DGGDI +
Sbjct:   62 IGKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVF 203          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:  244 VQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEY 672
            + +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I +DD ETV MIKELL+TRIRP V +DGGDI +
Sbjct:   58 IGKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVF 199          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: YH9J_SCHPO (NifU-like protein C1709.19c OS=Schizosaccharomyces pombe GN=SPBC1709.19c PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  130 YSRTLSYLSNPITSQNSTLLKSIPLSSS--VQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVME--VGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            + R + + S     Q  T L   P+SS+  V + ++ L  +  R+++I+++ TPN ++L F PG  ++   +GS +F   +  +NSPLA+ L+ +DG+  +FFG DFITV+K   T W  +KPE+F+ IM+  S+G P+  +     A DT I E DS+ VAMIKEL+ET IRP++ +DGGD+E+RGF
Sbjct:    3 FPRVVPFQSLRTAFQKKTFL---PVSSAGNVFTPRFQLQAI--RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFFGKDFITVSKGAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIKELIETSIRPSIQEDGGDVEFRGF 185          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_YEAST (NifU-like protein, mitochondrial OS=Saccharomyces cerevisiae GN=NFU1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 52/178 (29.21%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  208 SSVQSGKWNLFRVQ-RRTMFIQTQPTPNPSSLMFYP--GKPVMEVGSADFPNARAAMN----SPLAKSLY-GVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTA------------INEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            S  + GK  +F +  +R + I+T  TPN ++L F    G+ +   GS          N    S LA+ ++    G+  +  G DF+T+ K     W+ +KPEI   +    + G+ +      A  ++              + E+D E   +I+EL++TRIRPA+ +DGGDI+YRG+
Sbjct:    4 SVAKLGKSPIFYLNSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKINMPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGW 181          
The following BLAST results are available for this feature:
BLAST of FC932133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NFU1_DROWI1.269e-4050.00NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROVI2.165e-4056.76NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROAN8.227e-4057.64NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPS2.394e-3956.94NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE2.394e-3956.94NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
YH9J_SCHPO2.097e-3540.96NifU-like protein C1709.19c OS=Schizosaccharomyces... [more]
NFU1_YEAST2.947e-1329.21NifU-like protein, mitochondrial OS=Saccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205A04EF PostHarveN Citrus clementina cDNA clone C34205A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932133 ID=FC932133; Name=FC932133; organism=Citrus clementina; type=EST; length=683bp
GATCACAAGAGAAGAGAGCTTTCTTCAAGCTGAAGCATGAGGGGACTGGG
ACGGCTATTGCAGCGAGGTCTTTCTTCACACCGGCAGAGGCCGGGTTTCC
CCAAACAAAACGACGCCGTAGTTTATGCGTATTCCAGAACGCTGTCGTAT
TTGTCAAACCCGATCACTTCTCAAAATTCCACGTTACTAAAATCTATTCC
TCTCTCTTCTTCTGTACAATCCGGAAAATGGAATCTTTTTCGAGTGCAGA
GGAGGACAATGTTTATACAAACGCAGCCAACACCAAATCCTTCGTCTCTT
ATGTTTTATCCAGGGAAGCCTGTTATGGAAGTTGGGAGTGCAGATTTCCC
GAATGCTCGCGCAGCAATGAACTCTCCATTGGCAAAATCCCTTTACGGGG
TTGATGGTATTACTCGGGTTTTCTTTGGTTCAGATTTCATCACTGTGACA
AAATCAGAGGATACTTCTTGGGATTTACTCAAACCTGAAATTTTTGCTAC
AATTATGGACTTTTATTCGTCAGGGCAACCACTTTTTCTAGACTCAGAAA
CTGCAGCAGCCAAAGACACAGCTATTAATGAGGATGACTCAGAAACTGTT
GCAATGATCAAAGAACTCCTCGAGACCCGTATTCGGCCAGCTGTGNCAGA
TGACGGTGGGGATATTGAGTACAGAGGATTTGA
back to top