FC932138

Overview
NameFC932138
Unique NameFC932138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 89/172 (51.74%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      +Y KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 88/172 (51.16%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLAKGHSCYRPRRTGERKRKSVRG--CIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 88/172 (51.16%), Postives = 102/172 (59.30%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRR 232          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 90/174 (51.72%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519
            QGVLT  RVRLLL +   C+                 CIV  +LSVL+LVI+KKGE D+PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   RR    + GKK  SKAPKIQRLVTP+ L                      EY KLLA R+KE +ER+ E   +KRS
Sbjct:   65 QGVLTATRVRLLLDKNHSCYRPRRTGERKRKSVRG--CIVDSNLSVLSLVIIKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKME---RKRS 231          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 86/177 (48.59%), Postives = 102/177 (57.63%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519
            QGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ L                      +Y KLLA R KE + RR E L ++RS
Sbjct:   65 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG--CIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRS 237          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 87/173 (50.29%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ L                      +Y KLLA R KE + +R E  AK+R
Sbjct:   65 QGVLTHDRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKESKAKREE--AKRR 231          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 85/173 (49.13%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ L                      +Y KLL  R KE + +R E  AK+R
Sbjct:   65 QGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AKRR 231          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 88/174 (50.57%), Postives = 99/174 (56.90%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP  L                       Y KLLA R KE+RE      AK+RS
Sbjct:   65 QGVLTNGRVRLLLGKGHSCYRPRRTGERKRKSVRG--CIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEEREAH----AKRRS 230          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 84/177 (47.46%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519
            QGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ L                      +Y KLLA R KE + RR E + ++RS
Sbjct:   65 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG--CIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRS 237          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 79/175 (45.14%), Postives = 101/175 (57.71%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGV+ P RVRLLL + + C+                 CIVS DLSVL++VIVK+G+ D+ GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTK+GK  +KAPKIQRL+TP  L                      EY +LLA R+ E++  ++E   ++ S L
Sbjct:   65 QGVMHPTRVRLLLSKDSSCYRSRRAGERKRKSVRG--CIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235          
The following BLAST results are available for this feature:
BLAST of FC932138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_CHICK5.664e-3651.7440S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ONCMY2.152e-3551.1640S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_XENLA6.262e-3551.1640S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_APLCA1.542e-3351.7240S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_SPOFR1.705e-3248.5940S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_GLOMM4.962e-3250.2940S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_DROME4.962e-3249.1340S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_BRAFL6.480e-3250.5740S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_MANSE1.444e-3147.4640S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_YARLI4.644e-3045.1440S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]

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Properties
Property NameValue
Genbank descriptionC34205A09EF PostHarveN Citrus clementina cDNA clone C34205A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932138 ID=FC932138; Name=FC932138; organism=Citrus clementina; type=EST; length=691bp
CAAGGAGTGTTGACCCCTGGACGTGTTCGTCTTCTGCTCCACAGAGGTAC
TCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAGAGCGTCGGAGGAAAT
CTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCAGTGTTGAACTTGGTC
ATCGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACTGACACTGAGAA
GCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGATCAGGAAGTTGTTTA
ACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTCAACACATACCGTCGG
ACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAAGGCTCCTAAAATTCA
GAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGCGCGCCAGAATTGCTG
AGAAGAAGCAGAGAATTGCCAAGGCCAAAGCAGAGGCTGCCGAATACCAG
AAGCTCCTTGCTACCCGGTTGAAGGAACAGCGTGAACGTCGCAGTGAGAG
TTTGGCAAAGAAGAGATCCAGGCTCTCTGCTGCTTCTAAGCCATCTACTG
CTGCGGCTTAGATATGAAACAAGGGTGGTTTTTTGGTCAACAACTAAGTA
TAGTCAGGGCTGAATACTTCTATTAGGTTGAGGTAATTTTGATTGAGTGC
TCTATGGACTGGGGGAGACGCCCCCATTTTGGTTTTGATGG
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