FC932138
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36 Identity = 89/172 (51.74%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP L +Y KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35 Identity = 88/172 (51.16%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CI +LSVLNLVI+KKGE D+PGLTD+ PR GPKRASKIRKLFNL+KEDDVR+YV RR T + K +KAP+IQRLVTP L EY KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLAKGHSCYRPRRTGERKRKSVRG--CIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35 Identity = 88/172 (51.16%), Postives = 102/172 (59.30%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIV+KGE D+PGLTD PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP L EY KLLA R KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33 Identity = 90/174 (51.72%), Postives = 103/174 (59.20%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519 QGVLT RVRLLL + C+ CIV +LSVL+LVI+KKGE D+PGLTD PR GPKRASKIRKLFNLSKEDDVR+YV RR + GKK SKAPKIQRLVTP+ L EY KLLA R+KE +ER+ E +KRS Sbjct: 65 QGVLTATRVRLLLDKNHSCYRPRRTGERKRKSVRG--CIVDSNLSVLSLVIIKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKME---RKRS 231
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32 Identity = 86/177 (48.59%), Postives = 102/177 (57.63%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519 QGVLT RVRLL+ +G C+ CIV +LSVL LVIV+KGE ++PGLTD PR GPKRASKIRKLFNLSKEDDVR+YV +R K GK+ + KAPKIQRLVTP+ L +Y KLLA R KE + RR E L ++RS Sbjct: 65 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG--CIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRS 237
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32 Identity = 87/173 (50.29%), Postives = 100/173 (57.80%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT RVRLLL +G C+ CIV ++SVL LVIVKKGE D+PGLTDT PR GPKRASKIRKL+NLSK DDVR YV RR K KK +SKAPKIQRL+TP+ L +Y KLLA R KE + +R E AK+R Sbjct: 65 QGVLTHDRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKESKAKREE--AKRR 231
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32 Identity = 85/173 (49.13%), Postives = 101/173 (58.38%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV ++SVL LV++KKGE D+PGLTDT PR GPKRASKIRKL+NLSKEDDVR++V RR K KK SKAPKIQRL+TP+ L +Y KLL R KE + +R E AK+R Sbjct: 65 QGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AKRR 231
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32 Identity = 88/174 (50.57%), Postives = 99/174 (56.90%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519 QGVLT GRVRLLL +G C+ CIV +LSVLNLVI+KKGE D+PGLTDT PR GPKRA +IRKLFNL+KEDDVR+YV RR K GKK K PKIQRL+TP L Y KLLA R KE+RE AK+RS Sbjct: 65 QGVLTNGRVRLLLGKGHSCYRPRRTGERKRKSVRG--CIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEEREAH----AKRRS 230
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31 Identity = 84/177 (47.46%), Postives = 101/177 (57.06%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519 QGVLT RVRLL+ +G C+ CIV +LSVL LVIV+KGE ++PGLTD PR GPKRASKIRKLFNLSKEDDVR+YV + K GK+ + KAPKIQRLVTP+ L +Y KLLA R KE + RR E + ++RS Sbjct: 65 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG--CIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRS 237
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30 Identity = 79/175 (45.14%), Postives = 101/175 (57.71%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525 QGV+ P RVRLLL + + C+ CIVS DLSVL++VIVK+G+ D+ GLT PR GPKRA+ IRKLF LSKEDDVR+YV RR TTK+GK +KAPKIQRL+TP L EY +LLA R+ E++ ++E ++ S L Sbjct: 65 QGVMHPTRVRLLLSKDSSCYRSRRAGERKRKSVRG--CIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235 The following BLAST results are available for this feature:
BLAST of FC932138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932138 ID=FC932138; Name=FC932138; organism=Citrus clementina; type=EST; length=691bpback to top |