FC932138

Overview
NameFC932138
Unique NameFC932138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 80/176 (45.45%), Postives = 99/176 (56.25%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVL P RVRLLL  G PC+                 CIV  DL+VL L I+K+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TL                      E+ +L+A R+ E +++R    A++ S L
Sbjct:   65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRG--CIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKARRASSL 237          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 79/173 (45.66%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+ L                      EY K+L  R +++R RR   L+  R
Sbjct:   65 QGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDQNLSALALIVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMR 233          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 79/176 (44.89%), Postives = 99/176 (56.25%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVL P RVRLLL  G PC+                 CIV  DL+VL L IVK+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TL                      E+ +L+A R+ E ++++    A++ S +
Sbjct:   65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRG--CIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARRASSM 237          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29
Identity = 79/173 (45.66%), Postives = 97/173 (56.07%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT   R  GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+ L                      EY K+L  R +++R RR   L+  R
Sbjct:   65 QGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMR 233          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 75/173 (43.35%), Postives = 97/173 (56.07%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 519
            QG+LT GRVRLLL +G  C+                 CIV  ++S L+LVIVKKG+ ++ GLTD+  PR  GPKRASKIRKLFNL+K DDV KYV T+ +TF     K +  APKIQRL+TP  +                       Y KLLA   KE+ + +   +A++RS
Sbjct:   65 QGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRG--CIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARRRS 230          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 75/175 (42.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGV+ P RV+LLL +G  C+                 CIV+ DL+VL L +VK+G+ D+ GLTDT  P+  GPKRA+ IRK F L+KEDDVR++V    R    K  KK +KAPKIQRLVTP TL                      EY +LLA RL E++  R+E   ++ S L
Sbjct:   65 QGVMHPTRVKLLLAKGHSCYRPRRTGERKRKSVRG--CIVAQDLAVLALSVVKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFV---VRREVVKGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKKRRASSL 234          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.680e-27
Identity = 77/175 (44.00%), Postives = 94/175 (53.71%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   ++ S L
Sbjct:   65 QGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRG--AIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSL 234          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.276e-27
Identity = 76/175 (43.43%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVL P RV+LLL +G  C+                  IV PDL+VL+LVIVKKGE +L G+TD   P+  GPKRA+ IRK F L+KEDDVR +V    R   TK  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E+  ++ S L
Sbjct:   65 QGVLLPTRVKLLLAKGHSCYRPRRSGERKRKSVRG--AIVGPDLAVLSLVIVKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRKRRASSL 234          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.063e-26
Identity = 73/175 (41.71%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVL P RV+LLL +G  C+                  IV PDL+VL L+I KKGE ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   ++ S L
Sbjct:   65 QGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRG--AIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRASSL 234          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 76/172 (44.19%), Postives = 94/172 (54.65%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQ----RERRSESL 504
            QGVL P RV+LL+ +GT C+                  IV PDL+VL LVIVKKG+ ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  L                      EY +LLA RL E+    R+RR+ SL
Sbjct:   65 QGVLLPTRVKLLMAKGTSCYRPRRNGERKRKSVRG--AIVGPDLAVLALVIVKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAERKAEVRKRRASSL 231          
The following BLAST results are available for this feature:
BLAST of FC932138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6A_SCHPO4.644e-3045.4540S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]
RS6_AEDAE6.065e-3045.6640S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6B_SCHPO1.351e-2944.8940S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]
RS6_AEDAL5.134e-2945.6640S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_CAEEL1.652e-2743.3540S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS6_DEBHA2.817e-2742.8640S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_YEAST3.680e-2744.0040S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_CANGA6.276e-2743.4340S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6_KLULA9.063e-2641.7140S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_KLUMA1.184e-2544.1940S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205A09EF PostHarveN Citrus clementina cDNA clone C34205A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932138 ID=FC932138; Name=FC932138; organism=Citrus clementina; type=EST; length=691bp
CAAGGAGTGTTGACCCCTGGACGTGTTCGTCTTCTGCTCCACAGAGGTAC
TCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAGAGCGTCGGAGGAAAT
CTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCAGTGTTGAACTTGGTC
ATCGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACTGACACTGAGAA
GCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGATCAGGAAGTTGTTTA
ACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTCAACACATACCGTCGG
ACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAAGGCTCCTAAAATTCA
GAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGCGCGCCAGAATTGCTG
AGAAGAAGCAGAGAATTGCCAAGGCCAAAGCAGAGGCTGCCGAATACCAG
AAGCTCCTTGCTACCCGGTTGAAGGAACAGCGTGAACGTCGCAGTGAGAG
TTTGGCAAAGAAGAGATCCAGGCTCTCTGCTGCTTCTAAGCCATCTACTG
CTGCGGCTTAGATATGAAACAAGGGTGGTTTTTTGGTCAACAACTAAGTA
TAGTCAGGGCTGAATACTTCTATTAGGTTGAGGTAATTTTGATTGAGTGC
TCTATGGACTGGGGGAGACGCCCCCATTTTGGTTTTGATGG
back to top