FC932138

Overview
NameFC932138
Unique NameFC932138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   ++ S L
Sbjct:   65 QGVLLPTRVKLLMAKGTSCYRPRRNGERKRKSVRG--AIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSL 234          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 72/171 (42.11%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKK 513
            QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+                      EY KL+A R + + +R  +  +KK
Sbjct:   65 QGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRG--CIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKK 232          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 64/163 (39.26%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    4 GVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 489
            GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:   67 GVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 64/163 (39.26%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    4 GVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 489
            GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:   67 GVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
The following BLAST results are available for this feature:
BLAST of FC932138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASHGO1.002e-2439.4340S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI2.232e-2442.1140S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA1.354e-2139.2640S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN1.354e-2139.2640S ribosomal protein S6 OS=Leishmania infantum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205A09EF PostHarveN Citrus clementina cDNA clone C34205A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932138 ID=FC932138; Name=FC932138; organism=Citrus clementina; type=EST; length=691bp
CAAGGAGTGTTGACCCCTGGACGTGTTCGTCTTCTGCTCCACAGAGGTAC
TCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAGAGCGTCGGAGGAAAT
CTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCAGTGTTGAACTTGGTC
ATCGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACTGACACTGAGAA
GCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGATCAGGAAGTTGTTTA
ACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTCAACACATACCGTCGG
ACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAAGGCTCCTAAAATTCA
GAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGCGCGCCAGAATTGCTG
AGAAGAAGCAGAGAATTGCCAAGGCCAAAGCAGAGGCTGCCGAATACCAG
AAGCTCCTTGCTACCCGGTTGAAGGAACAGCGTGAACGTCGCAGTGAGAG
TTTGGCAAAGAAGAGATCCAGGCTCTCTGCTGCTTCTAAGCCATCTACTG
CTGCGGCTTAGATATGAAACAAGGGTGGTTTTTTGGTCAACAACTAAGTA
TAGTCAGGGCTGAATACTTCTATTAGGTTGAGGTAATTTTGATTGAGTGC
TCTATGGACTGGGGGAGACGCCCCCATTTTGGTTTTGATGG
back to top