FC932143

Overview
NameFC932143
Unique NameFC932143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR19_ARATH (Putative two-component response regulator ARR19 OS=Arabidopsis thaliana GN=ARR19 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 55/125 (44.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  179 QFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKR 553
            QFP    VLVVD + T L  ++++++   Y+V+    AE AL  L + K+  +IVI D HMP +DG + L+ +  ++DLPV++MS D+  + VMK   +GACDY++KPV+ E + NIW+H+VRKR
Sbjct:   29 QFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHEINIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKEEVMANIWQHIVRKR 153          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR20_ARATH (Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.690e-23
Identity = 61/157 (38.85%), Postives = 91/157 (57.96%), Query Frame = 2
Query:  197 RVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKR--KNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGN 661
            RVL+V  D      L+ ++    Y+VTK    E A+  L  NK+  D+VI D HMPD++G   L  +G +MDLPV++MS +  K+ VM+ + +GACD+L+KPV  E +  +WRHV RKR  K+      +SG+VE    +    E+ +   S  EG+
Sbjct:   42 RVLLVGADSNSS--LKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDINGLDALNIIGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRMSKSGLDKPGESGTVESDPDEYDDLEQDNLYESNEEGS 196          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 56/159 (35.22%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEM---DLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGN 661
            LRVL+V++D +  +++  +LR C YEV        A   L   +N  D+V+++V MP + G  LL ++       D+PVIMMS++DS   V K ++ GA D+L+KP+R   LKN+W+HV R+  +      +SG   +   +PK  +E + +S +N  N
Sbjct:   81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDN 239          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 56/159 (35.22%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEM---DLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGN 661
            LRVL+V++D +  +++  +LR C YEV        A   L   +N  D+V+++V MP + G  LL ++       D+PVIMMS++DS   V K ++ GA D+L+KP+R   LKN+W+HV R+  +      +SG   +   +PK  +E + +S +N  N
Sbjct:   81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKPKVDDEYENNSGSNNDN 239          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 51/157 (32.48%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV---GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANE 655
            ++VL+VD D +  +++  +LR C+YEV      + A   L   +N  D+V+++V MP + G  LL ++    +  ++PVIMMS++D+   V K ++ GA D+L+KP+R   LKN+W+HV R+  +      +SG   +   + K  +E++ +S +N+
Sbjct:   62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNSGSND 218          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 50/157 (31.85%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV---GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANE 655
            ++VL+VD D +  +++  +LR C+YEV      + A   L   +N  D+V+++V MP + G  LL ++    +  ++PVIMMS++D+   V K ++ GA D+L+KP+R   LKN+W+HV R+  +      +SG   +   + K  +E++ ++ +N+
Sbjct:   62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIQTQKCAKSKSGDESNNNNGSND 218          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 47/122 (38.52%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLE---MDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRK 550
            LRVL+V+ D +  +I+  +LR C Y+V   +    A ++L+   +  D++++++ +P + GF LL  V       ++PVIMMS+ DS ++V+K +  GA DYLIKP+R   LKN+W+HV R+
Sbjct:   37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 158          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.480e-18
Identity = 52/157 (33.12%), Postives = 92/157 (58.60%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDL---PVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANE 655
            L+VL+V++D +   I+  +L+ C YEVT       A  +L   K+  D+V+++V MP   G  LL ++     L   PVIMMS+ DS  +V K +++GA D+L+KP+R   LKN+W+HV R+  +      +SG  ++   +P+ ++ ++  +S ++
Sbjct:   64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGIHDKKSVKPESTQGSENDASISD 220          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 48/124 (38.71%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMD----LPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKR 553
            +RVL+ + D +   I+  +LR C Y V   +    A D+L+      D+V+++V +P M GF LL  + +E D    +PVIMMS++DS  +V K +  GA D+L+KP+R   L+N+W+HV RK+
Sbjct:   43 VRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMSGFLLLSTI-MEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRKQ 165          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 53/166 (31.93%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDL----PVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKN------EWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGN 661
            LRVL+V+ D +  +I+  +LR C Y V        A +ML+      D+++++V +P + G+ LL  + +E D+    PVIMMS  DS   V K +  GA DYL+KP+R   L+N+W+HV R++ +       W +       E         +  D+  S N G+
Sbjct:   50 LRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSISGYALLTLI-MEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRRQTSLAPDSFPWNESVGQQKAEGASANNSNGKRDDHVVSGNGGD 214          
The following BLAST results are available for this feature:
BLAST of FC932143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ARR19_ARATH2.716e-2444.00Putative two-component response regulator ARR19 OS... [more]
ARR20_ARATH6.690e-2338.85Putative two-component response regulator ARR20 OS... [more]
PRR73_ORYSJ3.671e-2135.22Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI3.671e-2135.22Two-component response regulator-like PRR73 OS=Ory... [more]
PRR37_ORYSI1.068e-2032.48Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSJ2.379e-2031.85Two-component response regulator-like PRR37 OS=Ory... [more]
APRR9_ARATH2.227e-1838.52Two-component response regulator-like APRR9 OS=Ara... [more]
APRR3_ARATH6.480e-1833.12Two-component response regulator-like APRR3 OS=Ara... [more]
PRR95_ORYSJ2.462e-1738.71Two-component response regulator-like PRR95 OS=Ory... [more]
APRR5_ARATH2.462e-1731.93Two-component response regulator-like APRR5 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205B02EF PostHarveN Citrus clementina cDNA clone C34205B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932143 ID=FC932143; Name=FC932143; organism=Citrus clementina; type=EST; length=668bp
GAAAGCCATGTCTTCTTCAACTTCAATCCCTTAAAAAAATATTTTTTTCT
TCTTAATATGTAACTCAAATCTCTCTTCTATCTCTCTAATTCTTTGCGTA
TCTCATCTGGGTTCTTTGAATTTCGAACTGGAAAAAGGATCCATGTCACC
CGCTAGTTCAAGTGTTGCTGTTTCCGATCAGTTCCCGGCTGGCTTACGTG
TCCTTGTTGTTGATGATGATCCTACTTGTCTTAGGATCTTGGAAAAGATG
CTTAGGACATGTCTTTATGAAGTTACAAAATGCAATCGAGCAGAGATTGC
TTTGGATATGCTTCGAACGAACAAGAATGGGTACGATATTGTTATCAGTG
ATGTTCATATGCCAGATATGGATGGATTCAAACTCCTTGAGCAGGTCGGG
CTGGAGATGGACCTGCCGGTTATCATGATGTCTGCGGATGATAGCAAACA
AGTTGTCATGAAAGGTGTTACTCACGGTGCTTGTGATTATTTAATTAAGC
CAGTTCGAATTGAGGCACTGAAGAACATATGGCGGCATGTGGTTCGGAAG
AGGAAGAACGAGTGGAAGGACTTGGAGCAGTCAGGAAGTGTGGAAGAGGG
AGATCGGCAACCAAAACCATCTGAAGAAGCGGATTATTCTTCCTCAGCAA
ATGAAGGAAATTGGAGAA
back to top