FC932143

Overview
NameFC932143
Unique NameFC932143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDL---PVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRK 556
            +R+L+ D+D T L  +  +L  C Y+VT    A   +D L       DI+++++ +P   G K+L  +  + DL   PVIMMS  D   VV+K +  GA DYL+KP+R   L N+W H+ R+R+
Sbjct:   19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRR 142          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 53/160 (33.12%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV---GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVE-EGDRQPKPSEEADYSSSANEGN 661
            +RVL+V++D     I+  +LR C YEV + +    A  +L    N  DIV+++V MP + G  LL ++       ++PVIMMS+ DS  +V K ++ GA D+L+KP+R   LK +W+HV R+ ++      +SG+ + +   + K  +++D  S +++ N
Sbjct:   78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDEN 237          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 43/124 (34.68%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDL---PVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRK 556
            +R+L+ D DP+  R + ++L  C Y+VT        +++L       DI++++V +P    FK+L+ +    +L   P+IMMS  D   VV+K +  GA +YL+KP+R+  L N+W HV R+R+
Sbjct:   28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRR 151          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR21_ARATH (Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 41/138 (29.71%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGD 604
            + V+VVDDD   L I+ +ML+   Y V   +  + AL  L+  ++  D++I+D +MP M+G +L +Q+  E  +LPV++MS+D +K+   + ++ GA  ++ KP+    L  I++  +  ++N    L    + ++ D
Sbjct:   16 INVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRDNIDLIITDYYMPGMNGLQLKKQITQEFGNLPVLVMSSDTNKE--EESLSCGAMGFIPKPIHPTDLTKIYQFALSNKRNGKSTLSTEQNHKDAD 151          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: PDE2_DICDI (3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium discoideum GN=regA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  185 PAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVG---LEMDLPVIMMS--ADDSKQVVMKGVTHGACDYLIKPVRIEALK----NIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSE 625
            P+ +R+LV DDD    +IL  +L+   Y VT     EIA + +   +  YD+V++DV MP + GF LL+++    +   +PVI+MS  A D K      +  G  D+L KP+  E LK     + + + ++RK E      +   E+G++  K  E
Sbjct:  157 PSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYK-YANDTIKIGGQDFLTKPIAKELLKKKIDTVLQSIWQRRKEEEYKATLAQEREKGNKLAKEME 311          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ZRAR_ECOLI (Transcriptional regulatory protein zraR OS=Escherichia coli (strain K12) GN=zraR PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  200 VLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV-GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALK 523
            +LVVDDD +   IL+ +LR   Y V   N    AL+ +R  +  +D+V+ DV M +MDG   L+++  L   +PV++M+A  S +  ++ +  GA DYLIKP+  + L+
Sbjct:    8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--EQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ZRAR_ECO57 (Transcriptional regulatory protein zraR OS=Escherichia coli O157:H7 GN=zraR PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  200 VLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV-GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALK 523
            +LVVDDD +   IL+ +LR   Y V   N    AL+ +R  +  +D+V+ DV M +MDG   L+++  L   +PV++M+A  S +  ++ +  GA DYLIKP+  + L+
Sbjct:    8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--ERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: NISR_LACLA (Nisin biosynthesis regulatory protein nisR OS=Lactococcus lactis subsp. lactis GN=nisR PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 33/123 (26.83%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  197 RVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEAL-KNIWRHVVRKRKNE 562
            ++L+VDDD   L++++  L    YEV       + LD+  T+  G+D+++ D+ M +++G ++ +++  E+  P+I +SA D+++ ++ G+  G  DY+ KP  ++ L   +  ++ R+ +N+
Sbjct:    4 KILIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDI--TDFQGFDLILLDIMMSNIEGTEICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREERNK 124          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: SPAR_BACSU (Transcriptional regulatory protein spaR OS=Bacillus subtilis GN=spaR PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 37/127 (29.13%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  197 RVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNK----NGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALK-NIWRHVVRKRKNE 562
            ++L VDD+   L +++ +LR   ++V         LD +         GYD+++ DV MPD+DGF+L +Q+   +D P++ ++A   ++ ++KG+  G  DY+ KP  +  L   +  H+ R+R+++
Sbjct:    3 KILAVDDEKDILVLIQNILRRDQHQVD-------ILDHVHGQPPDVFQGYDLILLDVMMPDIDGFELCKQIRPLVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLRRERRDK 122          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: YCF27_PORPU (Probable transcriptional regulator ycf27 OS=Porphyra purpurea GN=ycf27 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  197 RVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRK 550
            ++LVVDD+ +  RILE  L    YEV   +  E AL + R  K    +V+ DV MP +DG+ + +++  E D+P+IM++A       + G+  GA DY++KP   + L+   R V+R+
Sbjct:    7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFR--KEYPSLVVLDVMMPKLDGYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122          
The following BLAST results are available for this feature:
BLAST of FC932143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
APRR1_ARATH3.216e-1737.10Two-component response regulator-like APRR1 OS=Ara... [more]
APRR7_ARATH4.200e-1733.13Two-component response regulator-like APRR7 OS=Ara... [more]
PRR1_ORYSJ3.556e-1634.68Two-component response regulator-like PRR1 OS=Oryz... [more]
ARR21_ARATH1.826e-1229.71Putative two-component response regulator ARR21 OS... [more]
PDE2_DICDI2.385e-1232.053',5'-cyclic-nucleotide phosphodiesterase regA OS=... [more]
ZRAR_ECOLI2.019e-1136.70Transcriptional regulatory protein zraR OS=Escheri... [more]
ZRAR_ECO572.019e-1136.70Transcriptional regulatory protein zraR OS=Escheri... [more]
NISR_LACLA2.019e-1126.83Nisin biosynthesis regulatory protein nisR OS=Lact... [more]
SPAR_BACSU3.444e-1129.13Transcriptional regulatory protein spaR OS=Bacillu... [more]
YCF27_PORPU4.498e-1135.59Probable transcriptional regulator ycf27 OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionC34205B02EF PostHarveN Citrus clementina cDNA clone C34205B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932143 ID=FC932143; Name=FC932143; organism=Citrus clementina; type=EST; length=668bp
GAAAGCCATGTCTTCTTCAACTTCAATCCCTTAAAAAAATATTTTTTTCT
TCTTAATATGTAACTCAAATCTCTCTTCTATCTCTCTAATTCTTTGCGTA
TCTCATCTGGGTTCTTTGAATTTCGAACTGGAAAAAGGATCCATGTCACC
CGCTAGTTCAAGTGTTGCTGTTTCCGATCAGTTCCCGGCTGGCTTACGTG
TCCTTGTTGTTGATGATGATCCTACTTGTCTTAGGATCTTGGAAAAGATG
CTTAGGACATGTCTTTATGAAGTTACAAAATGCAATCGAGCAGAGATTGC
TTTGGATATGCTTCGAACGAACAAGAATGGGTACGATATTGTTATCAGTG
ATGTTCATATGCCAGATATGGATGGATTCAAACTCCTTGAGCAGGTCGGG
CTGGAGATGGACCTGCCGGTTATCATGATGTCTGCGGATGATAGCAAACA
AGTTGTCATGAAAGGTGTTACTCACGGTGCTTGTGATTATTTAATTAAGC
CAGTTCGAATTGAGGCACTGAAGAACATATGGCGGCATGTGGTTCGGAAG
AGGAAGAACGAGTGGAAGGACTTGGAGCAGTCAGGAAGTGTGGAAGAGGG
AGATCGGCAACCAAAACCATCTGAAGAAGCGGATTATTCTTCCTCAGCAA
ATGAAGGAAATTGGAGAA
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