FC932143

Overview
NameFC932143
Unique NameFC932143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: RCSC_SALTI (Sensor protein rcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV-GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKN---IWRHVVRKRK 556
            + +LVVDD P   R+L   L +  Y+    N    AL++L  +KN  DIV+SDV+MP+MDG++L +++  L + LPV+ ++A+   +   + +  G    L KPV ++ALK    ++   VRK +
Sbjct:  825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNAIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAERVRKTR 947          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: YCF27_PORYE (Probable transcriptional regulator ycf27 OS=Porphyra yezoensis GN=ycf27 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  197 RVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRK 550
            ++LVVDD+ +  RILE  L    YEV   +  E AL + R  K    +V+ DV MP +DG+ + +++  E D+P+IM++A       + G+  GA DY++KP   + L+   R V+R+
Sbjct:    7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFR--KEYPSLVVLDVMMPKLDGYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: MPRA_MYCTU (Response regulator mprA OS=Mycobacterium tuberculosis GN=mprA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV-GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNE 562
            +R+LVVDDD      L + L    Y V   +    ALDM+ +++   D ++ DV MP +DG ++  Q+ G   DLP+++++A DS    + G+  GA DYL KP  +E L    R ++R+ K E
Sbjct:    3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMMPRLDGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKPE 124          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: MPRA_MYCTA (Response regulator mprA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mprA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  194 LRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQV-GLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNE 562
            +R+LVVDDD      L + L    Y V   +    ALDM+ +++   D ++ DV MP +DG ++  Q+ G   DLP+++++A DS    + G+  GA DYL KP  +E L    R ++R+ K E
Sbjct:    3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMMPRLDGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKPE 124          
The following BLAST results are available for this feature:
BLAST of FC932143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RCSC_SALTI4.498e-1135.20Sensor protein rcsC OS=Salmonella typhi GN=rcsC PE... [more]
YCF27_PORYE5.874e-1135.59Probable transcriptional regulator ycf27 OS=Porphy... [more]
MPRA_MYCTU7.672e-1135.48Response regulator mprA OS=Mycobacterium tuberculo... [more]
MPRA_MYCTA7.672e-1135.48Response regulator mprA OS=Mycobacterium tuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC34205B02EF PostHarveN Citrus clementina cDNA clone C34205B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932143 ID=FC932143; Name=FC932143; organism=Citrus clementina; type=EST; length=668bp
GAAAGCCATGTCTTCTTCAACTTCAATCCCTTAAAAAAATATTTTTTTCT
TCTTAATATGTAACTCAAATCTCTCTTCTATCTCTCTAATTCTTTGCGTA
TCTCATCTGGGTTCTTTGAATTTCGAACTGGAAAAAGGATCCATGTCACC
CGCTAGTTCAAGTGTTGCTGTTTCCGATCAGTTCCCGGCTGGCTTACGTG
TCCTTGTTGTTGATGATGATCCTACTTGTCTTAGGATCTTGGAAAAGATG
CTTAGGACATGTCTTTATGAAGTTACAAAATGCAATCGAGCAGAGATTGC
TTTGGATATGCTTCGAACGAACAAGAATGGGTACGATATTGTTATCAGTG
ATGTTCATATGCCAGATATGGATGGATTCAAACTCCTTGAGCAGGTCGGG
CTGGAGATGGACCTGCCGGTTATCATGATGTCTGCGGATGATAGCAAACA
AGTTGTCATGAAAGGTGTTACTCACGGTGCTTGTGATTATTTAATTAAGC
CAGTTCGAATTGAGGCACTGAAGAACATATGGCGGCATGTGGTTCGGAAG
AGGAAGAACGAGTGGAAGGACTTGGAGCAGTCAGGAAGTGTGGAAGAGGG
AGATCGGCAACCAAAACCATCTGAAGAAGCGGATTATTCTTCCTCAGCAA
ATGAAGGAAATTGGAGAA
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