FC932146

Overview
NameFC932146
Unique NameFC932146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: RAF1_HUMAN (RAF proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=RAF1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 78/214 (36.45%), Postives = 129/214 (60.28%), Query Frame = 1
Query:   52 WNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIIT--DSPMRDSSSAGTPEWMAPELIR---NEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            W I+ SE+ + TR+G G FG V++G W+G DVA+K+    D T E  + F NE+++L + RH N++LF+G  TK   L+++T++ E  SLY  +H+  Q+ K    +   + R   +G+  +H   I+HRD+KS N  +++  TVKI DFGL+ + +      +     G+  WMAPE+IR   N PF+ + D++S G++++EL T   P+  +
Sbjct:  342 WEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD-NLAIVTQWCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI 551          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: RAF1_BOVIN (RAF proto-oncogene serine/threonine-protein kinase OS=Bos taurus GN=RAF1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.420e-34
Identity = 78/214 (36.45%), Postives = 129/214 (60.28%), Query Frame = 1
Query:   52 WNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIIT--DSPMRDSSSAGTPEWMAPELIR---NEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            W I+ SE+ + TR+G G FG V++G W+G DVA+K+    D T E  + F NE+++L + RH N++LF+G  TK   L+++T++ E  SLY  +H+  Q+ K    +   + R   +G+  +H   I+HRD+KS N  +++  TVKI DFGL+ + +      +     G+  WMAPE+IR   N PF+ + D++S G++++EL T   P+  +
Sbjct:  342 WEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD-NLAIVTQWCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI 551          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: M3K13_MOUSE (Mitogen-activated protein kinase kinase kinase 13 OS=Mus musculus GN=Map3k13 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 85/211 (40.28%), Postives = 118/211 (55.92%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIITDSPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            + W + F E++    +G G  G VF G +   +VAIK   EQ+ T         +I  L +L+HPN+I F G CT+ P   +I EY   G LY ++      +K++ R        I  G+  +H  KI+HRDLKS N LV     VKI DFG S+ ++D   +  S AGT  WMAPE+IRNEP +EK DI+S GV++WEL T   P++ V
Sbjct:  158 DTWEVPFEEISELQWLGSGAQGAVFLGKFRAEEVAIKKVREQNET---------DIKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAG---RKITPRLLVDWSTGIASGMNYLHLHKIIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTK-MSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDV 355          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: M3K13_HUMAN (Mitogen-activated protein kinase kinase kinase 13 OS=Homo sapiens GN=MAP3K13 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 85/211 (40.28%), Postives = 118/211 (55.92%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIITDSPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            + W + F E++    +G G  G VF G +   +VAIK   EQ+ T         +I  L +L+HPN+I F G CT+ P   +I EY   G LY ++      +K++ R        I  G+  +H  KI+HRDLKS N LV     VKI DFG S+ ++D   +  S AGT  WMAPE+IRNEP +EK DI+S GV++WEL T   P++ V
Sbjct:  159 DTWEVPFEEISELQWLGSGAQGAVFLGKFRAEEVAIKKVREQNET---------DIKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAG---RKITPRLLVDWSTGIASGMNYLHLHKIIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTK-MSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDV 356          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: M3K13_BOVIN (Mitogen-activated protein kinase kinase kinase 13 OS=Bos taurus GN=MAP3K13 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 85/211 (40.28%), Postives = 118/211 (55.92%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIITDSPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            + W + F E++    +G G  G VF G +   +VAIK   EQ+ T         +I  L +L+HPN+I F G CT+ P   +I EY   G LY ++      +K++ R        I  G+  +H  KI+HRDLKS N LV     VKI DFG S+ ++D   +  S AGT  WMAPE+IRNEP +EK DI+S GV++WEL T   P++ V
Sbjct:  159 DTWEVPFEEISELQWLGSGAQGAVFLGKFRAEEVAIKKVREQNET---------DIKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAG---RKITPRLLVDWSTGIASGMNYLHLHKIIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTK-MSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDV 356          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: SPKA_DICDI (Stress-activated protein kinase alpha OS=Dictyostelium discoideum GN=spkA-1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 80/202 (39.60%), Postives = 120/202 (59.41%), Query Frame = 1
Query:   58 IDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMK--IVHRDLKSANCLVNKHWTVKICDFGLSRIITDSPMRD-SSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCT 654
            I+ +EL    ++G G  G+V++G++ G +VAIKV L+    ++ +E+F  E  I+S +R  +V+ F GA  +P +L M+ E    GSLYH+  +      + W R F+   +  RG+ C+H+    IVHRDLKS N LVN  W +K+CDFGLSR  T S +       GT  + APE+   E F+ K D++S+ VI+WEL T
Sbjct:  346 INDNELEYTEKLGAGSSGKVYKGLYRGKEVAIKV-LKSMTESKEIEEFKKEFQIMSAIRSKHVVHFYGAVLEP-KLCMVMENCSRGSLYHV--MDNNSLDIGWERTFRFAIETVRGIECLHKWDPPIVHRDLKSLNLLVNDKWEIKVCDFGLSRFNTGSNLETLVKMRGTFAYCAPEVYYGEQFSGKSDVYSIAVILWELVT 543          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: RMIL_AVII1 (Serine/threonine-protein kinase-transforming protein Rmil OS=Avian retrovirus IC10 GN=V-RMIL PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/216 (34.72%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIIT--DSPMRDSSSAGTPEWMAPELIR---NEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            ++W I   ++TVG R+G G FG V++G W+G DVA+K+      T + ++ F NE+ +L + RH N++LF+G  TKP +L+++T++ E  SLYH +H+   + K    +   + R   +G+  +H   I+HRDLKS N  +++  TVKI DFGL+ + +      +    +G+  WMAPE+IR     P++ + D+++ G++++EL T   P+  +
Sbjct:   58 DDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-QLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI 269          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: RMIL_AVEVR (Serine/threonine-protein kinase-transforming protein Rmil OS=Avian rous-associated virus type 1 GN=V-RMIL PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/216 (34.72%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIIT--DSPMRDSSSAGTPEWMAPELIR---NEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            ++W I   ++TVG R+G G FG V++G W+G DVA+K+      T + ++ F NE+ +L + RH N++LF+G  TKP +L+++T++ E  SLYH +H+   + K    +   + R   +G+  +H   I+HRDLKS N  +++  TVKI DFGL+ + +      +    +G+  WMAPE+IR     P++ + D+++ G++++EL T   P+  +
Sbjct:   74 DDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-QLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI 285          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: BRAF1_MOUSE (B-Raf proto-oncogene serine/threonine-protein kinase OS=Mus musculus GN=Braf PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/216 (34.72%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIIT--DSPMRDSSSAGTPEWMAPELIR---NEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            ++W I   ++TVG R+G G FG V++G W+G DVA+K+      T + ++ F NE+ +L + RH N++LF+G  TKP +L+++T++ E  SLYH +H+   + K    +   + R   +G+  +H   I+HRDLKS N  +++  TVKI DFGL+ + +      +    +G+  WMAPE+IR     P++ + D+++ G++++EL T   P+  +
Sbjct:  485 DDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-QLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI 696          
BLAST of FC932146 vs. ExPASy Swiss-Prot
Match: BRAF1_HUMAN (B-Raf proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=BRAF PE=1 SV=4)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/216 (34.72%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   46 EEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMELGSLYHLIHLSGQKKKLSWRRKFKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIIT--DSPMRDSSSAGTPEWMAPELIR---NEPFTEKCDIFSLGVIMWELCTLNRPWEGV 678
            ++W I   ++TVG R+G G FG V++G W+G DVA+K+      T + ++ F NE+ +L + RH N++LF+G  TKP +L+++T++ E  SLYH +H+   + K    +   + R   +G+  +H   I+HRDLKS N  +++  TVKI DFGL+ + +      +    +G+  WMAPE+IR     P++ + D+++ G++++EL T   P+  +
Sbjct:  448 DDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-QLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI 659          
The following BLAST results are available for this feature:
BLAST of FC932146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAF1_HUMAN1.853e-3436.45RAF proto-oncogene serine/threonine-protein kinase... [more]
RAF1_BOVIN2.420e-3436.45RAF proto-oncogene serine/threonine-protein kinase... [more]
M3K13_MOUSE5.392e-3440.28Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_HUMAN5.392e-3440.28Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_BOVIN5.392e-3440.28Mitogen-activated protein kinase kinase kinase 13 ... [more]
SPKA_DICDI7.042e-3439.60Stress-activated protein kinase alpha OS=Dictyoste... [more]
RMIL_AVII17.042e-3434.72Serine/threonine-protein kinase-transforming prote... [more]
RMIL_AVEVR7.042e-3434.72Serine/threonine-protein kinase-transforming prote... [more]
BRAF1_MOUSE7.042e-3434.72B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_HUMAN7.042e-3434.72B-Raf proto-oncogene serine/threonine-protein kina... [more]

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Properties
Property NameValue
Genbank descriptionC34205B05EF PostHarveN Citrus clementina cDNA clone C34205B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932146 ID=FC932146; Name=FC932146; organism=Citrus clementina; type=EST; length=698bp
GTTTTGGAATCTCCCATGTTCCAGAATAAACCTTTATTAGCTTATGAGGA
ATGGAACATTGACTTCTCTGAATTAACTGTGGGAACTCGTGTTGGAATTG
GTTTTTTCGGAGAAGTTTTTCGTGGCATATGGAATGGTACAGATGTTGCA
ATCAAGGTTTTCTTGGAGCAAGATCTAACAGCAGAAAACATGGAAGACTT
TTGCAATGAGATATCTATTCTAAGTCGTCTTCGGCATCCTAATGTTATCT
TATTTTTGGGTGCTTGCACAAAGCCTCCACGATTGTCAATGATTACTGAA
TACATGGAGCTGGGGTCCTTGTACCATTTGATTCATTTGAGTGGTCAAAA
AAAGAAGCTTAGCTGGAGGAGAAAATTTAAAATGCTACGTGATATATGCA
GGGGTTTGATGTGCATACACCGAATGAAGATAGTCCATCGTGACTTAAAA
AGTGCAAACTGTCTTGTGAATAAACACTGGACTGTCAAGATATGTGATTT
TGGGCTATCGAGAATAATAACGGACTCACCCATGAGAGACTCCTCATCTG
CTGGAACTCCAGAATGGATGGCTCCTGAACTTATTCGCAATGAACCCTTC
ACAGAAAAATGTGATATTTTTAGCCTTGGGGTCATAATGTGGGAGCTCTG
CACTCTAAATAGACCATGGGAAGGTGTACTACCAGAAGGGTTGTTTAT
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