FC932149

Overview
NameFC932149
Unique NameFC932149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_BOVIN (GPN-loop GTPase 3 OS=Bos taurus GN=GPN3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.275e-20
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHAL--GPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V V+NLDPA +   Y    +I +L+++ DVM +  L  GPNGGLV+CM+Y   N DWL++     ++D Y+LFD PGQ+EL+
Sbjct:   34 VQVVNLDPAAEHFNYSVMADIRELIEVDDVMEDSTLQFGPNGGLVFCMEYFANNFDWLEN-CLGHVEDDYILFDCPGQIELY 114          

HSP 2 Score: 38.5058 bits (88), Expect = 5.275e-20
Identity = 26/107 (24.30%), Postives = 48/107 (44.86%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRS 669
            + H      +++ +++   R+  V LVD+    +  K++               P VNV++K+DL+    K    +E + D    S L  +   D RS K++KLT +
Sbjct:  114 YTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNVMTKMDLLSKKAKK--EIEKFLDPDMYSLLDDST-SDLRSKKFKKLTNA 217          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_USTMA (GPN-loop GTPase 3 homolog UM01243 OS=Ustilago maydis GN=UM01243 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.926e-20
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V + NLDPA +   Y+ +++I++L+ L DVM E  LGPNGGL+YC +YL  N+DWL  +      D Y++ D PGQ+EL+
Sbjct:   34 VHLFNLDPAAERFEYQPSIDIKELISLEDVMEEMNLGPNGGLIYCFEYLLDNLDWLDDELGQ-FNDDYIIIDCPGQIELY 112          

HSP 2 Score: 34.6538 bits (78), Expect = 8.926e-20
Identity = 16/55 (29.09%), Postives = 27/55 (49.09%), Query Frame = 1
Query:  385 LIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIE 549
            L  + + R+ A +L+++    D  KY                PH+N+LSK+DL+E
Sbjct:  125 LSSQYHFRICATYLLESQFIDDKTKYFAGVLSAMSAMINLEVPHINLLSKMDLVE 179          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_SCHPO (GPN-loop GTPase 3 homolog fet5 OS=Schizosaccharomyces pombe GN=fet5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.162e-19
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  114 VINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            ++NLDPA ++  +E  V+I DL+ + DVM E   GPNGGL+YC ++L +N+DWL  +     +D YL+FD PGQ+EL+
Sbjct:   36 LVNLDPAAENFEWEPTVDIRDLISIDDVMEELDYGPNGGLIYCFEFLMENLDWLNEEIGDYDED-YLIFDMPGQIELY 112          

HSP 2 Score: 33.4982 bits (75), Expect = 1.162e-19
Identity = 18/60 (30.00%), Postives = 30/60 (50.00%), Query Frame = 1
Query:  373 VIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIEN 552
            +I  L   LN R  AV+L+++    D  K+                PH+N+LSK+DL+++
Sbjct:  121 LIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKD 180          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_DANRE (GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.963e-19
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHAL--GPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V V+NLDPA +   Y    +I +L+++ DVM + +L  GPNGGL++CM+Y   N DWL+ +S   ++D Y+LFD PGQ+EL+
Sbjct:   34 VQVVNLDPAAEHFEYPVIADIRELIQVDDVMEDDSLRFGPNGGLIFCMEYFSNNFDWLE-ESLGHVEDDYILFDCPGQIELY 114          

HSP 2 Score: 34.2686 bits (77), Expect = 1.963e-19
Identity = 24/107 (22.43%), Postives = 46/107 (42.99%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRS 669
            + H      ++  +++   R+  V LVD+    +  K++               P VN+++K+DL+    K    +E Y D  D+  +        RS K+ KLT++
Sbjct:  114 YTHLPVMKQLVEQLQQWEFRVCGVFLVDSQFMVETFKFISGVMAALSAMVMLEIPQVNIMTKMDLLSPKAKK--EIEKYLD-PDMYSMMEDNSVALRSKKFSKLTKA 217          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_XENLA (GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.498e-19
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHAL--GPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V V+NLDPA +   Y    +I +L+++ DVM + +L  GPNGGLVYCM+Y   N DWL+S      +D Y+LFD PGQ+EL+
Sbjct:   34 VQVVNLDPAAEHFDYPVLADIRELIEVDDVMEDRSLRFGPNGGLVYCMEYFANNFDWLES-CLGHTEDDYILFDCPGQIELY 114          

HSP 2 Score: 31.5722 bits (70), Expect = 9.498e-19
Identity = 21/107 (19.63%), Postives = 46/107 (42.99%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRS 669
            + H      ++  +++   R+  V LVD+    +  K++               P  N+++K+DL+    K    +E + D    S ++    +  +S K++KLT +
Sbjct:  114 YTHLPVMKYLVEQLQQWEFRVCGVFLVDSQFMVESFKFLSGVLAALSAMVSLEIPQCNIMTKMDLLSKKAKK--EIEKFLDPDMYSMIEDTPSRF-KSTKFKKLTEA 217          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_XENTR (GPN-loop GTPase 3 OS=Xenopus tropicalis GN=gpn3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.089e-18
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHAL--GPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V V+NLDPA +   Y    +I +L+++ DVM + +L  GPNGGLVYCM+Y   N DWL+S      +D Y+LFD PGQ+EL+
Sbjct:   34 VQVVNLDPAAEHFDYPVLADIRELIEVDDVMEDRSLRFGPNGGLVYCMEYFANNFDWLES-CLGHTEDDYILFDCPGQIELY 114          

HSP 2 Score: 30.4166 bits (67), Expect = 2.089e-18
Identity = 21/107 (19.63%), Postives = 46/107 (42.99%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRS 669
            + H      ++  +++   R+  V LVD+    +  K++               P  N+++K+DL+    K    +E + D    S ++    +  +S K++KLT +
Sbjct:  114 YTHLPVMKYLVEQLQQWEFRVCGVFLVDSQFMVESFKFLSGVLAALSAMVSLEIPQCNIMTKMDLLGKKAKK--EIEKFLDPDMYSMIEDTSNRF-KSNKFKKLTEA 217          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_DICDI (GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.592e-18
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V ++NLDPA +   Y  +V+I++LV + +VM E   GPNGGLVY M+YL +N+DWL  +     +D YL+ D PGQ+EL+
Sbjct:   34 VHIVNLDPAAEVFEYPVSVDIKNLVTVDEVMDELHYGPNGGLVYAMEYLIENMDWLTDELGD-YEDDYLIIDCPGQIELY 112          

HSP 2 Score: 33.4982 bits (75), Expect = 4.592e-18
Identity = 21/95 (22.11%), Postives = 45/95 (47.37%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLI---ENYGKLA--FNLEYYTDVQDLSYLQH 618
            + H     +++  ++++   + +V LVD+    D  K++               PH+NVL+KID++   + Y ++    +LE    V++L+   H
Sbjct:  112 YSHIPVMRILVDHLQQIGYSVCSVFLVDSQFILDNCKFISGALMCLSAMVRLEVPHINVLTKIDVLKTSDQYKEIEKFLDLEVQNLVEELNLETH 206          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_YEAST (GPN-loop GTPase 2 homolog OS=Saccharomyces cerevisiae GN=YOR262W PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  114 VINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDW--LQSKSEPLLKDHYLLFDFPGQVELFFSSFQCQECYHETHKEV 398
            V+N+DPAND+LPY CAV+I D + L ++M E  LGPNGGL+Y ++ L+ +ID   LQ KS    +  YL+FD PGQVELF         + +  KE+
Sbjct:   35 VVNMDPANDALPYPCAVDIRDFITLEEIMQEQQLGPNGGLMYAVESLDNSIDLFILQIKSLVEEEKAYLVFDCPGQVELFTHHSSLFNIFKKMEKEL 131          

HSP 2 Score: 82.4185 bits (202), Expect = 2.590e-15
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  346 FFLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSA---KYRKLTRS 669
            F  HS+  N+  ++ K+L++R   V+L+D    + P +Y+               PH+NV SKID++++YG+L F L+YYT+VQDL YL+  + ++  S    KY KLT +
Sbjct:  114 FTHHSSLFNIFKKMEKELDIRFCVVNLIDCFYMTSPSQYISILLLALRSMLMMDLPHINVFSKIDMLKSYGELPFRLDYYTEVQDLDYLEPYIEKEGSSVLGKKYSKLTET 224          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_CRYNE (GPN-loop GTPase 3 homolog CNB04680/CNBB1090 OS=Cryptococcus neoformans GN=CNB04680 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  108 VAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            V ++NLDPA D   YE  ++I DL+ L DVM E   GPNGGL+YC +YL  N+DWL+ +     +D YL+ D PGQ+EL+
Sbjct:   33 VHLVNLDPAADKFEYEPTIDIRDLINLEDVMEELEFGPNGGLIYCFEYLLNNLDWLEDEL-GAYEDDYLIIDCPGQIELY 111          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_SCHPO (GPN-loop GTPase 2 homolog OS=Schizosaccharomyces pombe GN=SPAC144.07c PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  346 FFLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRS 669
            F  H++ + +I  L K+L+ R  +V LVDA+ C++P  YV               PHVN+LSK DL+  YG L   L+++T+VQDLSYL   L +D R  +Y  L ++
Sbjct:  111 FTNHNSLQKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMPHVNILSKADLLCTYGTLPMKLDFFTEVQDLSYLAPLLDRDKRLQRYSDLNKA 218          

HSP 2 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  114 VINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELFFSSFQCQECYHETHKEV 398
            ++NLDPAND + Y CA++I  ++ +  +  ++ LGPNG L+Y M+ +E +++WL  K     +D Y++FD PGQVELF +    Q+      KE+
Sbjct:   35 IVNLDPANDFIKYPCAIDIRKVLDVEMIQKDYDLGPNGALIYAMEAIEYHVEWL-LKELKKHRDSYVIFDCPGQVELFTNHNSLQKIIKTLEKEL 128          
The following BLAST results are available for this feature:
BLAST of FC932149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GPN3_BOVIN5.275e-2046.34GPN-loop GTPase 3 OS=Bos taurus GN=GPN3 PE=2 SV=1[more]
GPN3_USTMA8.926e-2046.25GPN-loop GTPase 3 homolog UM01243 OS=Ustilago mayd... [more]
GPN3_SCHPO1.162e-1947.44GPN-loop GTPase 3 homolog fet5 OS=Schizosaccharomy... [more]
GPN3_DANRE1.963e-1946.34GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2[more]
GPN3_XENLA9.498e-1948.78GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 S... [more]
GPN3_XENTR2.089e-1848.78GPN-loop GTPase 3 OS=Xenopus tropicalis GN=gpn3 PE... [more]
GPN3_DICDI4.592e-1847.50GPN-loop GTPase 3 homolog OS=Dictyostelium discoid... [more]
GPN2_YEAST7.312e-1847.42GPN-loop GTPase 2 homolog OS=Saccharomyces cerevis... [more]
GPN3_CRYNE3.629e-1750.00GPN-loop GTPase 3 homolog CNB04680/CNBB1090 OS=Cry... [more]
GPN2_SCHPO1.983e-1538.89GPN-loop GTPase 2 homolog OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC34205B08EF PostHarveN Citrus clementina cDNA clone C34205B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932149 ID=FC932149; Name=FC932149; organism=Citrus clementina; type=EST; length=711bp
AAGTACAGGTAATTCAGACCTCTGCGGTTCAACCGAGTGGTTTTCAAGCA
GCTTCCTCTTTGATGGCCAAAAAATTGATTTGGGCTTTGCCTTTTAAATG
AATGAAGGTTGCAGTCATCAACTTGGATCCTGCTAATGATAGTTTGCCAT
ATGAGTGTGCTGTGAATATCGAGGACCTCGTTAAACTAAGTGATGTGATG
ATGGAGCATGCACTCGGTCCAAATGGAGGTCTTGTGTATTGTATGGACTA
TCTAGAGAAGAATATTGACTGGTTGCAGTCAAAATCGGAACCACTTTTGA
AAGATCATTATCTTCTGTTTGATTTTCCTGGCCAAGTTGAATTATTTTTT
TCTTCATTCCAATGCCAAGAATGTTATCATGAGACTCATAAAGAAGTTAA
ATCTCAGGTTGACTGCAGTGCATCTAGTTGATGCGCATCTTTGCAGTGAC
CCTGGAAAGTATGTTAGTGCTTTGCTTCTCTCGTTGTCTACGATGCTACA
TCTGGAACTTCCCCACGTCAATGTCTTGTCTAAGATCGACTTGATTGAGA
ATTATGGAAAGCTAGCTTTTAATCTTGAGTACTATACGGATGTGCAAGAT
TTGTCGTATTTACAGCATGCTCTGGGTCAGGACCCTCGTTCTGCTAAGTA
CAGAAAGCTTACAAGGAGCTGTGTGATGTAATAGAGACTACAGTCTGGTC
AATTTTCACCT
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