FC932156

Overview
NameFC932156
Unique NameFC932156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15460 contig Ccv1_Contig15460:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932156 vs. ExPASy Swiss-Prot
Match: DFRA_PETHY (Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 55/207 (26.57%), Postives = 103/207 (49.76%), Query Frame = 2
Query:    2 MAKVEEKLVLFNVDVLDYQSILVALKDCCALFCCLDSPD----GYDDKMVDLEVRGAINVVEACAQTDSIQKLVFSSSLTAAIWREDICSEKDVDERSWSNQDF--CRKLKLW-YALAKTLSEQAAWALAMDRLLCMVSINAGPVLGPAVTQQNPQS---TMFYLKGAAQMY---ENGVLAFVDVNFLADVHIRVFEDRSTSGRYFC 583
            + K +  L L+  D+    S   A++ C  +F      D      +++++   VRG ++++E+CA+ +++++LVF+SS      +E    +   D+ SWS+ DF   +K+  W Y  +K L+E+AA   A  + +  +SI    V+GP +T   P S    +  + G    Y   + G   +V ++ L + HI ++E     GR+ C
Sbjct:   61 LPKADTNLTLWKADLTVEGSFDEAIQGCQGVFHVATPMDFESKDPENEVIKPTVRGMLSIIESCAKANTVKRLVFTSSAGTLDVQEQ--QKLFYDQTSWSDLDFIYAKKMTGWMYFASKILAEKAAMEEAKKKNIDFISIIPPLVVGPFITPTFPPSLITALSLITGNEAHYCIIKQG--QYVHLDDLCEAHIFLYEHPKADGRFIC 263          
BLAST of FC932156 vs. ExPASy Swiss-Prot
Match: DFRA_HORVU (Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 53/202 (26.24%), Postives = 100/202 (49.50%), Query Frame = 2
Query:   14 EEKLVLFNVDVLDYQSILVALKDCCALFCC-----LDSPDGYDDKMVDLEVRGAINVVEACAQTDSIQKLVFSSSLTAAIWREDICSEKDVDERSWSNQDFCRKLKL--W-YALAKTLSEQAAWALAMDRLLCMVSINAGPVLGPAVTQQNPQSTMFYLK----GAAQMYENGVLAFVDVNFLADVHIRVFEDRSTSGRYFC 583
            +E+L ++  D+ +  S   A+  C  +F        DS D  +++++   V G ++++ AC +  +++++VF+SS  +    E        D+ +WS+ D+CR++K+  W Y ++K L+E+AA   A +  L  +SI    V+GP ++   P S +  L       A       +  V ++ L D    +FE    +GRY C
Sbjct:   55 KERLSIWKADLSEDGSFNEAIAGCTGVFHVATPMDFDSQDP-ENEVIKPTVEGMLSIMRACKEAGTVKRIVFTSSAGSVNIEER--PRPAYDQDNWSDIDYCRRVKMTGWMYFVSKALAEKAAMEYASENGLDFISIIPTLVVGPFLSAGMPPSLVTALALITGNEAHYSILKQVQLVHLDDLCDAMTFLFEHPEANGRYIC 253          
The following BLAST results are available for this feature:
BLAST of FC932156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DFRA_PETHY2.308e-1126.57Dihydroflavonol-4-reductase OS=Petunia hybrida GN=... [more]
DFRA_HORVU8.770e-1126.24Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34205C03EF PostHarveN Citrus clementina cDNA clone C34205C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932156 ID=FC932156; Name=FC932156; organism=Citrus clementina; type=EST; length=624bp
AATGGCGAAAGTGGAGGAGAAACTGGTGTTGTTTAATGTCGATGTTTTGG
ACTACCAAAGCATTCTTGTTGCTTTAAAGGACTGTTGTGCTTTGTTCTGC
TGTTTAGATAGCCCAGATGGCTATGATGATAAAATGGTGGATTTGGAAGT
GAGAGGAGCAATCAATGTGGTGGAAGCATGTGCACAAACTGATAGTATAC
AGAAGCTAGTCTTCAGTTCTTCTTTAACTGCAGCCATCTGGAGAGAGGAC
ATTTGTTCAGAGAAGGATGTTGATGAGAGGTCTTGGAGTAATCAAGATTT
TTGTAGAAAATTGAAGTTATGGTATGCCCTTGCAAAGACACTATCTGAAC
AAGCTGCCTGGGCTCTAGCCATGGATCGGCTGCTGTGCATGGTTTCCATA
AATGCCGGTCCAGTTCTCGGGCCAGCTGTCACTCAACAGAACCCTCAATC
AACAATGTTTTATCTCAAAGGGGCAGCTCAAATGTACGAAAACGGGGTCC
TGGCATTTGTCGATGTAAACTTCTTAGCTGATGTCCATATTCGAGTATTT
GAGGATCGATCAACAAGTGGTCGATATTTCTGCTTTCATCAGATTGTGAA
TACTGAGGAAGAAGCTTTNCAGCT
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