FC932157

Overview
NameFC932157
Unique NameFC932157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/128 (50.78%), Postives = 88/128 (68.75%), Query Frame = 2
Query:  152 LQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            LQ+DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   E A  +  ++ +YNR  RE
Sbjct:   13 LQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
The following BLAST results are available for this feature:
BLAST of FC932157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UB2D2_XENLA6.208e-3548.87Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT6.208e-3548.87Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE6.208e-3548.87Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN6.208e-3548.87Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN6.208e-3548.87Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UB2D4_HUMAN1.806e-3450.78Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D3_RAT1.806e-3448.87Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB1.806e-3448.87Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE1.806e-3448.87Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA1.806e-3448.87Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionC34205C04EF PostHarveN Citrus clementina cDNA clone C34205C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932157 ID=FC932157; Name=FC932157; organism=Citrus clementina; type=EST; length=689bp
GACGAGATTCCTCCTCGCTCGATGATCTTACTGCTCACAATCTGATCCTC
CCCTCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTGTCGGACGCCTCTA
TGCTCACAACGTGCTGAACACACCGGTTTGCATTGGCGGGACTTCGGGCG
CCTCCAAAAGGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACA
ACATCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGG
GACGGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAA
TAAACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCT
ATGCGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCT
ATATATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGA
TCCAAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTG
AGAATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGC
TGGACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCAGTAG
AAATAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCG
TGTACTCCGTAATCAATCTGATTTCAGGTGCATTGTTAT
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