FC932157

Overview
NameFC932157
Unique NameFC932157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   LQ+DPPA  S  P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   LQ+DPPA  S  P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   LQ+DPPA  S  P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    8 KELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P   ++  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:    8 KELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P   ++  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:    8 KELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 2
Query:  152 LQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            L +DPPA  S  P  +++  W A I GP D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YN   RE
Sbjct:   13 LGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  137 RDFGRLQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++ SICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140          
BLAST of FC932157 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 63/128 (49.22%), Postives = 87/128 (67.97%), Query Frame = 2
Query:  152 LQKDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 535
            L +DPPA  S  P  +++  W A I GP ++P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+  RE
Sbjct:   13 LGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140          
The following BLAST results are available for this feature:
BLAST of FC932157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UB2D3_HUMAN1.806e-3448.87Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG1.806e-3448.87Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D1_MOUSE4.024e-3447.37Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN4.024e-3447.37Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN4.024e-3447.37Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT4.024e-3446.62Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE4.024e-3446.62Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBCD1_DROME5.256e-3450.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D3_BOVIN1.171e-3348.12Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC2_CAEEL1.529e-3349.22Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionC34205C04EF PostHarveN Citrus clementina cDNA clone C34205C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932157 ID=FC932157; Name=FC932157; organism=Citrus clementina; type=EST; length=689bp
GACGAGATTCCTCCTCGCTCGATGATCTTACTGCTCACAATCTGATCCTC
CCCTCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTGTCGGACGCCTCTA
TGCTCACAACGTGCTGAACACACCGGTTTGCATTGGCGGGACTTCGGGCG
CCTCCAAAAGGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACA
ACATCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGG
GACGGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAA
TAAACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCT
ATGCGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCT
ATATATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGA
TCCAAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTG
AGAATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGC
TGGACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCAGTAG
AAATAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCG
TGTACTCCGTAATCAATCTGATTTCAGGTGCATTGTTAT
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