FC932162

Overview
NameFC932162
Unique NameFC932162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 76/226 (33.63%), Postives = 123/226 (54.42%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQG*KMPEAAATGYR 678
            P E   P+CT+ +FP+ I+H + WAR  FEGL ++    VN YL+SP    +++K + +   R+ L+ + + L  E+  +F++CI WARL+F+ +F + ++QL F FP++  TS G PFWS PKR P PL F + +  H  F++AA+ L A  YG+        P      +     P F PK  +KI+ +E   +  T +  D   +  +      P ++  G+R
Sbjct:  585 PPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTSSNP--REVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGLKSE---TDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKDKQELKSIADS-LPPPSSLVGFR 804          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 74/206 (35.92%), Postives = 118/206 (57.28%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIE-TDEKATSMSTGSIDDA 615
            P E   P+CT+ +FP+ I+H + WAR EFEGL +++   VN YLT P      ++ AG  Q  + L+ +   L  +R +T+ DC+TWA   +   ++  ++QL   FP    TS+G  FWS PKR P PL F +++  HL ++MAA+ L A+TYG+      +    +A  +  + VP F PK  ++I  ++++  S S  +IDD+
Sbjct:  623 PPEKSIPICTLKNFPNAIEHTVQWARDEFEGLFKQSAENVNQYLTDPKFMERTLQLAG-TQPLEVLEAIHCSLVLQRPQTWADCVTWAYQHWHTQYSHNIQQLLHNFPPAQLTSSGALFWSGPKRCPHPLTFDINNPLHLDYVMAAANLFAQTYGL---GGSQDCAVVAKLLQSLPVPKFAPKSGIRIHVSEQELQSTSATTIDDS 824          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 63/194 (32.47%), Postives = 103/194 (53.09%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKA 582
            P E + P CT+ SFP  I+H + WAR +FE      P+  N +  +       ++   + Q+ +   +V++ L + R   +  C+  ARL+FE YF  +  QL   FP      +G+ FW +PKR P P++F +++  HL FL +A+ L A  Y IP  +   S   L D +++V + +F+P   V ++TDE A
Sbjct:  617 PPEEEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKPSLFNKFWQAYPSAEDVLQKIQNGQSLEGCFQVIKLLSR-RPRIWSQCVELARLKFEKYFNHKALQLLHCFPLETRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQSAAKLYATVYCIPFSEKDLSVNSLMDILSEVKIEEFKPSNKV-VQTDETA 808          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKA 582
            P E + P CT+ SFP  I+H + WAR +FE      P+  N +  + +     ++      + +   +V++ L + R   +  C+  ARL+FE YF  +  QL   FP ++   +G+ FW +PKR P P++F +++  HL FL  A+ L A  Y IP  +   S   L + +++V + +F+P   V ++TDE A
Sbjct:  617 PPEEEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKPSLFNKFWQTYSSAEEVLQKIQSGHSLEGCFQVIKLLSR-RPRNWSQCVELARLKFEKYFNHKALQLLHCFPLDIRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQNAAKLYATVYCIPFAEEDLSADALLNILSEVKIQEFKPSNKV-VQTDETA 808          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   19 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIP-IPDW 483
            P+CTV  FP   +H L WAR EFE L   +   +N +  + T  A    +  + Q    L  VL  L + R + +QDC+ WA   ++  F   +KQL   FP N    +GTPFWS PK+ P+PL+F  +  +HL +++AA+ L A+ +G+P   DW
Sbjct:  597 PVCTVRYFPSTAEHTLQWARHEFEELFRLSAETINHHQQAHTSLA----DMDEPQTLTLLKPVLGVL-RVRPQNWQDCVAWALGHWKLCFHYGIKQLLRHFPPNKVLEDGTPFWSGPKQCPQPLEFDTNQDTHLLYVLAAANLYAQMHGLPGSQDW 747          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBE1Y_MACRU (Ubiquitin-activating enzyme E1 Y (Fragment) OS=Macropus rufus GN=UBE1Y PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFP 324
            P E   P+CT+ +FP+ I+H L WAR EFE L ++    VN YLT+P ++       G  Q  + L+ V   L  +R   + DC+TWA L +   +A+ ++QL   FP
Sbjct:   43 PPEKSIPICTLKNFPNAIEHTLQWARDEFESLFKQPAENVNQYLTNP-KFVERTLRLGGTQPLEVLEAVHRSLVLQRPHDWADCVTWACLHWHSQYANNIRQLLHNFP 149          
The following BLAST results are available for this feature:
BLAST of FC932162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBA1_SCHPO6.101e-3533.63Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1Y_MOUSE2.170e-3235.92Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA6_MOUSE3.964e-2632.47Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA6_HUMAN2.569e-2531.44Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA7_HUMAN1.010e-2137.18Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBE1Y_MACRU1.082e-1537.04Ubiquitin-activating enzyme E1 Y (Fragment) OS=Mac... [more]

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Properties
Property NameValue
Genbank descriptionC34205C09EF PostHarveN Citrus clementina cDNA clone C34205C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932162 ID=FC932162; Name=FC932162; organism=Citrus clementina; type=EST; length=681bp
CCAGCTGAAAACCAAGCTCCCATGTGCACAGTTCATTCATTCCCACACAA
CATTGATCACTGCCTGACTTGGGCTCGGTCTGAGTTTGAGGGTTTGCTTG
AGAAGACACCAGCAGAAGTAAATGCCTATCTGACTAGTCCCACTGAGTAC
GCATCTGCAATGAAGAATGCTGGTGATGCTCAGGCCAGGGACAACTTGGA
CCGCGTCCTTGAATGCCTTGATAAGGAGAGATGTGAAACATTCCAAGACT
GTATCACCTGGGCCCGTCTAAGGTTTGAAGACTACTTTGCTGACCGTGTG
AAGCAATTGACATTTACTTTTCCTGAGAATGTTACAACCAGCAACGGGAC
ACCCTTCTGGTCAGCCCCCAAGCGTTTCCCCCGCCCTTTGCAGTTCTCAG
TTGATGATCTCAGTCACCTTCAATTTTTGATGGCAGCATCAATATTACGA
GCTGAAACATATGGCATTCCTATCCCTGATTGGGTCAAGTCACCCGTAAA
GCTAGCTGATGCTGTTAACAAAGTGATAGTCCCTGATTTCCAGCCCAAGG
AAAATGTAAAGATTGAGACAGATGAGAAAGCCACAAGTATGTCCACTGGA
TCAATTGATGATGCTGTAGTAATCAATGAGTTGCTCCAAGGTTAGAAAAT
GCCAGAAGCAGCTGCCACAGGNTACAGATGA
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