FC932163

Overview
NameFC932163
Unique NameFC932163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS10_MOUSE (Dual specificity protein phosphatase 10 OS=Mus musculus GN=Dusp10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  166 VPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEE 426
            +P  D   +NL  Y +  F+FI+   + G G+L+HC AGVSRSA I+ AYLM+  +++  DA + ++     + PN  F+ QL  FEE
Sbjct:  374 LPATDSNKQNLRRYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFEE 461          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: VHP1_CAEEL (Tyrosine-protein phosphatase vhp-1 OS=Caenorhabditis elegans GN=vhp-1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  160 MTVPIRDMESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFK 438
            M +P+ D   E L  Y  + ++F+++ R+ G   L+HC AG+SRS  +  +Y+MR  ++ S+DA   +++   S+ PN  F+ QL  +E +  K
Sbjct:  225 MRIPVNDSYQEKLSPYFPMAYEFLEKCRRAGKKCLIHCLAGISRSPTLAISYIMRYMKMGSDDAYRYVKERRPSISPNFNFMGQLLEYENVLIK 318          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS9_HUMAN (Dual specificity protein phosphatase 9 OS=Homo sapiens GN=DUSP9 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  166 VPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFE 423
            +PI D  S+NL  +     +FID    +  GVLVHC AGVSRS  +  AYLM+   LS  DA + +++   ++ PN  F+ QL  FE
Sbjct:  255 IPISDHWSQNLSRFFPEAIEFIDEALSQNCGVLVHCLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNISPNFNFMGQLLDFE 341          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS15_HUMAN (Dual specificity protein phosphatase 15 OS=Homo sapiens GN=DUSP15 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  100 SPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMF 420
            SP  LL  + Y         + +P+ D     +  +   C +FI   R  GG  LVHCFAG+SRS  I+TAY+M    L   D LE+++ +     PN GF +QL+ F
Sbjct:   37 SPQPLLQDITY---------LRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHCFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLEEF 135          
The following BLAST results are available for this feature:
BLAST of FC932163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DUS10_MOUSE7.280e-1139.77Dual specificity protein phosphatase 10 OS=Mus mus... [more]
VHP1_CAEEL9.508e-1132.98Tyrosine-protein phosphatase vhp-1 OS=Caenorhabdit... [more]
DUS9_HUMAN9.508e-1141.38Dual specificity protein phosphatase 9 OS=Homo sap... [more]
DUS15_HUMAN9.508e-1136.11Dual specificity protein phosphatase 15 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205C10EF PostHarveN Citrus clementina cDNA clone C34205C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932163 ID=FC932163; Name=FC932163; organism=Citrus clementina; type=EST; length=646bp
ATCCCCTCCAAGGAGATTAAGAAGGTTTATGCTGGTGGATCCGGTGATGG
TGGCTCGGGCTCTGTGGATGATCTAGGTGATGGGTCAAGAAGCTGTTTGT
CCCCCACAAAACTCTTGTACTCATTGGAATATGCTGGCAAGGATTTGAAG
CTGGTGAGAATGACTGTGCCTATAAGGGATATGGAAAGTGAGAATTTGTT
GGATTATTTGGATGTATGTTTTGATTTCATTGATCGGAGAAGAAAGGAGG
GGGGTGTTTTGGTTCATTGCTTTGCAGGAGTGTCCAGGAGTGCAGCTATC
ATTACAGCATATTTGATGAGAACTGAGCAACTATCTTCAGAAGATGCACT
TGAATCTCTACGGCAGAGCTGTGAGTCTGTTTGTCCCAATGATGGCTTTT
TAGAACAGTTGAAAATGTTTGAAGAAATGGGCTTTAAGGTCAATCGTGGT
AGCCCCATTTACAAGCGATTTCGCCTGAAAGTATTAGGTGATTCTTATAA
TCGTGGAGAGAAAATAGACAGTTCCAAATTTGGAGCTGATCCTGGCTTGC
CAGTGGAAGTTTTGTCAGGAGTAGAAGCAATTCCAAATGGAGGAGATAAT
CGTACCCCTGCGTACCGGTGNTAGAAATGTCGAAGAGTTGTTGCCT
back to top