FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig226 contig Ccv1_Contig226:4..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_NEUCR (Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E+V+  KEAF + D +  G+I             QN  E++LQ ++   D D +G++ + EF+ +    +K   ++E + +AF  FDR+ +GFI   ELR+ +    +   +D ++ ++ + D D DGRI Y EF  +M
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/148 (31.08%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ E+++  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  +M A
Sbjct:    1 MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_MAGGR (Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E+V+  KEAF + D +  G+I             QN  E++LQ ++   D D +G++ + EF+ +    +K   ++E + +AF  FDR+ +GFI   ELR+ +    +   +D ++ ++ + D D DGRI Y EF  +M
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/148 (31.08%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ +++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  +M A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_COLTR (Calmodulin OS=Colletotrichum trifolii PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E+V+  KEAF + D +  G+I             QN  E++LQ ++   D D +G++ + EF+ +    +K   ++E + +AF  FDR+ +GFI   ELR+ +    +   +D ++ ++ + D D DGRI Y EF  +M
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_COLGL (Calmodulin OS=Colletotrichum gloeosporioides PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E+V+  KEAF + D +  G+I             QN  E++LQ ++   D D +G++ + EF+ +    +K   ++E + +AF  FDR+ +GFI   ELR+ +    +   +D ++ ++ + D D DGRI Y EF  +M
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQNPSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/148 (31.08%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ +++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  +M A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM1_ORYSJ (Calmodulin-1 OS=Oryza sativa subsp. japonica GN=CAM1-1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/148 (31.08%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ +++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  +M A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM1_ORYSI (Calmodulin-1 OS=Oryza sativa subsp. indica GN=CAM1-1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/148 (31.08%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ +++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  +M A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   37 FLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKM----ANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            FLS E +A  K AF+M D +  G I+            QN  + +L  ++E  D DG G++ + EF+ + V   K      ++E L   F  FD+N  GFI+IEEL   L    +   E+ I  +M D D + DGRI ++EF  MM+
Sbjct:   13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMME 159          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CALM_NEUCR4.851e-1730.82Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2[more]
CALM_MEDSA4.851e-1731.08Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2[more]
CALM_MAGGR4.851e-1730.82Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4[more]
CALM_HORVU4.851e-1731.08Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2[more]
CALM_COLTR4.851e-1730.82Calmodulin OS=Colletotrichum trifolii PE=3 SV=2[more]
CALM_COLGL4.851e-1730.82Calmodulin OS=Colletotrichum gloeosporioides PE=2 ... [more]
CALM2_SOYBN4.851e-1731.08Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2[more]
CALM1_ORYSJ4.851e-1731.08Calmodulin-1 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM1_ORYSI4.851e-1731.08Calmodulin-1 OS=Oryza sativa subsp. indica GN=CAM1... [more]
TNNC2_MELGA6.336e-1734.69Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]

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Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
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