FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 48/172 (27.91%), Postives = 82/172 (47.67%), Query Frame = 1
Query:    1 QA*KRALQVVAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSV----------HLKKMANDEHL--------HKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            QA +   + +A+ L+ +++   +E+F + D N  G I             +N  +ADLQ +M   D+DGDG++ + EF+ +            H KK   D  L         +AF  FD+N  G+I + ELR  +    +T  +  +  ++++ D D DG IS+ EF  +M
Sbjct:   81 QAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVM 252          

HSP 2 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 48/173 (27.75%), Postives = 78/173 (45.09%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSV----------HLKKMANDE-------HLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKAGTDWRKASR 495
            +A+ L+ +++   +E+F + D N  G I             +   +ADLQ LM  AD+DGDG++ + EF+ V            H KK   D+          ++F  FD+N  G I  +ELR  +        +  +  +M++VD D DG I + EF  +M       +A R
Sbjct:    1 MADKLTDDQITEYRESFRLFDKNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPR 173          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 42/142 (29.58%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L+ E++   KEAF + D +  G I             QN  E +LQ ++   D DG+G++ + EF+ +  + L++   DE L +AF  FD++++G+I   ELR+ + +  +   ++ ++ ++ + D D DG+++Y+EF  MM
Sbjct:   28 LTQEQIMEFKEAFCLFDKDGDGCITADELATVIRSLDQNPTEQELQDMITEIDSDGNGTIEFSEFLNLMANQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEFVRMM 169          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALL_CAEEL (Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 42/141 (29.79%), Postives = 71/141 (50.35%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L+ EE+   +EAF M D +  G I+            QN  E ++  ++   D+DG+G + + EF  +   + K  + E + +AF  FD++ +G I  +E R  +        E+ ++ ++ +VD D DG I YEEF  MM
Sbjct:   18 LTPEEIDEFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQIEFPEFCVMMKRMMKETDSEMIREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSEEEVDEMIKEVDVDGDGEIDYEEFVKMM 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 38/129 (29.46%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   67 KEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEF 450
            KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +G+I   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF
Sbjct:    3 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDSNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 131          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   34 EFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            E +  + V  L+E F+  D N  GKI+             ++ EA+++ +ME AD DGDG ++  EFV ++    K A+ + L  AF  FDR+ +G I   EL + L    +    +    I+H+VD + DG IS EEF  MM
Sbjct:   17 EVVMEQSVHELEEVFKKFDANGDGKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQEFVDLN---NKGASVKDLKNAFKVFDRDCNGSISAAELCHTLESVGEPCTIEESKNIIHNVDKNGDGLISVEEFQTMM 156          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALL_DROME (Calmodulin-related protein 97A OS=Drosophila melanogaster GN=And PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSV-HLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L+ E++A  K+AF   D    GKI             QN  EA+LQ L+  A+ + +G L + EF  +    +++   +E + +AF  FDR+  GFI   ELR  + +  +   ++ I+ ++ + D D DG I+YEEF  M+
Sbjct:    4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMI 145          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 46/148 (31.08%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   31 AEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFV-AVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNAL---NDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            A+ LS +++A +K+AF+M D +  G+I             +   +A+L+ ++   D DG+G++ Y EFV  ++  +     ++ + +AF  FD++ +G I   ELR  +   +DE  TS E  I+ ++ + D D DG ++YEEF  MM
Sbjct:    1 AKELSEKQIAEIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRVFDKDGNGLITAAELRQVMANFSDEKLTSEE--ISEMIREADIDGDGMVNYEEFVKMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   58 AGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAV-SVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDV--INAIMHDVDTDKDGRISYEEFAVMMKAG 471
            A L   F+M D N  GKI               IP+ DL  ++E  D++GDG +   EF  +    +++   +E + +AF+ FD+NR GFI +EELR+ L       G  +     ++  VD D DG ++++EF  MMK G
Sbjct:    4 AELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMMKGG 144          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMAND-----EHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L+ ++++  ++AF + D N  G I+                + DLQ ++ A D DG+G++ + EF+A+ +  K   ND     E L KAF  FD++ +GFI   EL   +    +   ED I+ +M   D++ DG++ YEEF  +M
Sbjct:    5 LNEQQISDFRDAFSLFDKNNDGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAI-MKKKLYENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMMKAADSNNDGQVDYEEFKRVM 149          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 48/153 (31.37%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + EF+ + V       K  ++E L   F  FD+N  G+I++EEL+  L    +T  ED I  +M D D + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CML12_ARATH1.726e-1427.91Calmodulin-like protein 12 OS=Arabidopsis thaliana... [more]
CML11_ARATH2.943e-1429.58Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CALL_CAEEL3.844e-1429.79Calmodulin-like protein OS=Caenorhabditis elegans ... [more]
CALN_CHICK5.020e-1429.46Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV... [more]
POLC2_JUNOX8.564e-1434.27Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]
CALL_DROME8.564e-1431.69Calmodulin-related protein 97A OS=Drosophila melan... [more]
CABO_LOLPE8.564e-1431.08Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CML3_ARATH1.461e-1333.33Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML6_ORYSJ2.492e-1330.82Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
TNNC1_PIG3.254e-1331.37Troponin C, slow skeletal and cardiac muscles OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
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