FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 48/153 (31.37%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + EF+ + V       K  ++E L   F  FD+N  G+I++EEL+  L    +T  ED I  +M D D + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   64 LKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAV--SVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGE--DVINAIMHDVDTDKDGRISYEEFAVMMKAG 471
            LK  F+M D N  G I               IP+ +L  ++E  DV+GDG +   EF  +  ++  ++   +E + +AF+ FD+N  GFI ++EL+  L+      G+  D    ++  VD D DGR++Y+EF  MMK G
Sbjct:    6 LKRVFQMFDKNGDGTITGKELSETLRSLGIYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMMKGG 145          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 48/153 (31.37%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + EF+ + V       K   +E L   F  FD+N  G+I++EEL+  L    +T  ED I  +M D D + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + EF+ + V       K  ++E L   F  FD+N  G+I+++EL+  L    +T  ED I  +M D D + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + EF+ + V       K  ++E L   F  FD+N  G+I+++EL+  L    +T  ED I  +M D D + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + EF+ + V       K  ++E L   F  FD+N  G+I+++EL+  L    +T  ED I  +M D D + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM2_SOLTU (Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=PCM2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 35/107 (32.71%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  151 QNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+Y+EF  +M A
Sbjct:   17 QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMMA 123          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 42/143 (29.37%), Postives = 71/143 (49.65%), Query Frame = 1
Query:   49 EEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGE--DVINAIMHDVDTDKDGRISYEEFAVMMKAG 471
            E    LK  F+M D N  G+I               +P+ DL  +++  D +GDG +   EF ++   + +   +  +  AF+ FD++  GFI +EEL + +       G+  +    ++  VD D DGR++Y+EF  MMK+G
Sbjct:   47 ESPVDLKRVFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKEEGDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMMKSG 189          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC2_PONLE (Troponin C, isotype gamma OS=Pontastacus leptodactylus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 43/145 (29.66%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDE----HLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L  E+++ LK+AF+  DT+ +G I               I E +LQ ++   D DG G L + EFV ++       ++E     L +AF  +D+   G+I  + LR  L +  +   ED ++ I+ +VD D  G + ++EF  MM
Sbjct:    4 LDEEQLSALKKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQQVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELKEAFRIYDKGGDGYITTDVLREILRELDNRLTEDDLDGIIEEVDEDGSGTLDFDEFMEMM 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   34 EFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVA-VSVHLKKMANDE----HLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            E LS +++   ++ F M D   +G I             Q   E DL+ L++  D DG G + + EF A V+  +    NDE     L +AF  +D+  +G+I + +LR+ L    D   E+ ++ ++ ++D D  G + ++EF  MM
Sbjct:   10 EKLSADQIEQFRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
TNNC1_BOVIN3.254e-1331.37Troponin C, slow skeletal and cardiac muscles OS=B... [more]
CML7_ARATH3.254e-1332.86Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
TNNC1_CHICK4.250e-1331.37Troponin C, slow skeletal and cardiac muscles OS=G... [more]
TNNC1_MOUSE5.551e-1330.72Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_RABIT7.250e-1330.72Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN7.250e-1330.72Troponin C, slow skeletal and cardiac muscles OS=H... [more]
CALM2_SOLTU9.468e-1332.71Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=... [more]
CML4_ARATH1.237e-1229.37Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
TNNC2_PONLE1.615e-1229.66Troponin C, isotype gamma OS=Pontastacus leptodact... [more]
TNNC2_CAEEL2.109e-1228.38Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
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