FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML6_ARATH (Calmodulin-like protein 6 OS=Arabidopsis thaliana GN=CML6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   64 LKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEF----VAVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGE--DVINAIMHDVDTDKDGRISYEEFAVMMKAG 471
            L   F+M D +  GKI               IPE +L  +++  DV+GDG +   EF      + V  +    +E + +AF+ FDRN  GFI ++EL+  L+      G+  +    ++  VD D DGR++Y EF  MMK G
Sbjct:    6 LNRVFQMFDKDGDGKITTKELNESFKNLGIIIPEDELTQIIQKIDVNGDGCVDIEEFGELYKTIMVEDEDEVGEEDMKEAFNVFDRNGDGFITVDELKAVLSSLGLKQGKTLEECRKMIMQVDVDGDGRVNYMEFRQMMKKG 147          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   64 LKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAV------SVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGE--DVINAIMHDVDTDKDGRISYEEFAVMMKAG 471
            LK  F+M D N  G+I               IP+ DL  ++   D +GDG +   EF ++        H      +E +  AF+ FD++  GFI +EEL++ +       G+  D    ++  VD D DGR++Y+EF  MMK G
Sbjct:   66 LKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFESLYSSIVDEHHNDGETEEEDMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEFLQMMKGG 209          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   22 QVVAEFLSVEEVAGLKEAFEMMDTNKR-GKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMK 465
            +   E L+ E+    K AF++       G I+            QN    +LQ +++  D DG G++ + +F+ + V       K   +E L   F  FD+N  G+I++EEL+  L    +T  ED I  +M D + + DGRI Y+EF   MK
Sbjct:    6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFMK 158          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM3_SOLTU (Putative calmodulin-3 (Fragment) OS=Solanum tuberosum GN=PCM3 PE=5 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 36/107 (33.64%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  151 QNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            QN  EA+LQ ++   D DG+G++ + EF+ +    +K    +E L +AF  FD++R+GFI   EL + + +  +   ++ ++ I+ + D D DG+I+Y+EF  +M A
Sbjct:   17 QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKIKDTDFEEELKEAFRVFDKDRNGFISAAELPHVMTNLGEKLTDEEVDEIIREADVDCDGQINYDEFVKVMMA 123          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_PONLE (Troponin C, isotype alpha OS=Pontastacus leptodactylus PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHK----AFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L  E+V+ L++AF+  DT+ +G I               I E  LQ ++   D DG G + + EF  ++       ++E L K    AF  +DR   G+I  + LR  L +  +   ED ++ I+ ++D D  G I + EF  MM
Sbjct:    4 LDEEQVSALQKAFDSFDTDSKGFITPETVGIILRMMGVKISERHLQQVISETDEDGSGEIEFEEFAELAAKFLSEEDEEALKKELKEAFRIYDRGGDGYITTQVLREILKELDNRLTEDNLDEIIEEIDEDGSGTIDFMEFMKMM 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_HOMAM (Troponin C, isoform 1 OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 42/145 (28.97%), Postives = 70/145 (48.28%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHK----AFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L  ++V  L++AF   DT+ +G I               I +  LQ ++   D DG G + + EF A++       ++E L K    AF  +DR  +G+I +  L+  L +  +   ED +++I+ +VD D  G I + EF  MM
Sbjct:    4 LDEDQVQALQKAFNSFDTDDKGFITPDTVGVILRMMGVKISDRHLQEVISETDEDGSGEIEFEEFAALAAKFLSEEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGTIDFNEFMKMM 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNCB_HOMAM (Troponin C, isoform 2B OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDE----HLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L  E+++ L++AF+  DT+ +G I               I E +LQ ++   D DG G L + EFV ++       ++E     L +AF  +DR  +G+I  + L+  L +  +   E+ +++I+ +VD D  G + + EF  MM
Sbjct:    4 LDAEQLSALQKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQEVISETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELREAFRVYDRGGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMQMM 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 45/160 (28.12%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   16 ALQVVAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQ-NIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMAN------DEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKAGT 474
            AL+ +A  L  EE+A L++ F+ +D +K G I+               + +A +  +++A D + DG + +GEFVA ++H+ ++         +    AF  FD +  GFI  EELR      + T  +  I  ++ + D D DG+IS +EF  +++  +
Sbjct:  400 ALRALATTLDEEELADLRDQFDAIDVDKNGVISLEEMRQALAKDHPWKLKDARVAEILQAIDSNTDGFVDFGEFVAAALHVNQLEEHDSEKWQQRSRAAFEKFDIDGDGFITAEELR------MHTGLKGSIEPLLEEADIDNDGKISLQEFRRLLRTAS 553          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML10_ARATH (Calmodulin-like protein 10 OS=Arabidopsis thaliana GN=CML10 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 41/140 (29.29%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   49 EEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            ++++  +E F + D N  G I              N+ +A+LQ  +  +D+DGDG++ + EF+      K   +++ L K F  FD +++GFI   E+R           ++ I+ I+   D D DG+I+Y EFA +M A
Sbjct:    8 QQISEFREQFSVYDKNGDGHITTEEFGAVMRSLGLNLTQAELQEEINDSDLDGDGTINFTEFLCAMA--KDTYSEKDLKKDFRLFDIDKNGFISAAEMRYVRTILRWKQTDEEIDEIIKAADVDGDGQINYREFARLMMA 145          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 37/142 (26.06%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFV-AVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L+ +++   KEAF + D +  G I             QN  E +L  ++   D D +G++ + EF+  ++  L++   +E L +AF  FD++++G+I   EL + + +  +   ++ +  ++ + D D DG+++Y+EF  MM
Sbjct:    6 LTKDQITEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMM 147          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CML6_ARATH2.109e-1232.39Calmodulin-like protein 6 OS=Arabidopsis thaliana ... [more]
CML5_ARATH2.755e-1231.25Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
TNNC1_COTJA3.598e-1230.07Troponin C, slow skeletal and cardiac muscles OS=C... [more]
CALM3_SOLTU3.598e-1233.64Putative calmodulin-3 (Fragment) OS=Solanum tubero... [more]
TNNC1_PONLE4.699e-1229.66Troponin C, isotype alpha OS=Pontastacus leptodact... [more]
TNNC1_HOMAM4.699e-1228.97Troponin C, isoform 1 OS=Homarus americanus PE=1 S... [more]
TNNCB_HOMAM6.137e-1228.28Troponin C, isoform 2B OS=Homarus americanus PE=1 ... [more]
CDPKG_ARATH6.137e-1228.13Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]
CML10_ARATH1.047e-1129.29Calmodulin-like protein 10 OS=Arabidopsis thaliana... [more]
CML8_ARATH1.786e-1126.06Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
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