FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig226 contig Ccv1_Contig226:4..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 41/136 (30.15%), Postives = 68/136 (50.00%), Query Frame = 1
Query:   64 LKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALND-EVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            LK+ F+  D N  GKI+             +  E +L  +++  D+D DG +   EF  +    +  ++   + +AF  +D+N++G I   E+   LN   +  S ED +  I H VDTD DG +++EEF  MM +
Sbjct:   21 LKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFATI---CRSSSSAVEIREAFDLYDQNKNGLISSSEIHKVLNRLGMTCSVEDCVRMIGH-VDTDGDGNVNFEEFQKMMSS 152          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNCA_HOMAM (Troponin C, isoform 2A OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 40/145 (27.59%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDE----HLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L  E++  L++AF+  DT+ +G I               I E +LQ ++   D DG G L + EFV ++       ++E     L +AF  +D+  +G+I  + L+  L +  +   E+ +++I+ +VD D  G + + EF  MM
Sbjct:    4 LDEEQIGALQKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQEVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKTELREAFRVYDKEGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMEMM 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC3_DROME (Troponin C, isoform 3 OS=Drosophila melanogaster GN=TpnC73F PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 44/149 (29.53%), Postives = 72/149 (48.32%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVS----VHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            V E L+ E++A L++AF   D  K G I             Q   +  L+ L+E  D D  G L +GEFV ++    V     A  + L +AF  +D+  +GFI    L+  L +  D   E  ++ ++ ++D+D  G + ++EF  MM
Sbjct:    4 VDEDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDKKILEELIEEVDEDKSGRLEFGEFVQLAAKFIVEEDAEAMQKELREAFRLYDKQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFMEMM 152          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC2_BALNU (Troponin C, isoform 2 OS=Balanus nubilis PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 41/145 (28.28%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL----KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L  +++A LK+AF+  D  K+G IN            Q      L+ L++  D DG G L + EFV ++          A  + L +AF  +D+   G+I    L++ L +  +T   + ++ I+ ++DTD  G + ++EF  MM
Sbjct:    5 LDKDQIAMLKKAFDGFDHEKKGAINCDVVATILRMMGQAYNAQTLKELIDEVDADGSGMLEFEEFVTLAAKFIIDDDAEAMAKELKEAFRLYDKAGKGYIPTSALKDILKELDETLNAEDLDNIIGEIDTDGSGTVDFDEFMEMM 149          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   64 LKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHL-KKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDV--INAIMHDVDTDKDGRISYEEFAVMMKAG 471
            L   F+M D N  GKI               +PE ++  ++   DV+GDG++   EF ++   + ++   +E + +AF  FD+N  GFI  EELR+ L       G  +     ++  VD D DG ++++EF  MM+ G
Sbjct:    6 LSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMMRGG 144          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 41/142 (28.87%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   40 LSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVA-VSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            L+ E++A  KEAF + D +  G I+             +  EA++  LM   DVDG+  + + EF+A +S  LK   +++ L +AF  FD+N  G I   EL++ L    +   +  ++ ++ +V +D  G I+ ++FA ++
Sbjct:    5 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-SDGSGEINIQQFAALL 145          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALGL_BOTIN (Calglandulin OS=Bothrops insularis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 44/147 (29.93%), Postives = 63/147 (42.86%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVS--VHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A  L+ E++   K  FEM D    G +              N  + DL  + +  D D  G+     F+A+    H K    DE L  AF  FD+   G+IE + L+  L +  +   E     +M + D D DG I YEEF  MM
Sbjct:    1 MAATLTPEQITEYKGIFEMFDEEGNGLVKTDDLESLMSLVGINPTKRDLANMAKDVDKDKKGTFNCDGFLALMGIYHEKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEQEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 1
Query:   52 EVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKM-AND--EHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKAGT 474
            E+  L+  F+  D N  GKI+              +PE +L+  +   D  GDG + + EFV ++   K M  ND  E+L  AFS +D + +G I  EEL   L    D         ++  VD D DG I +EEF +MM  G+
Sbjct:   34 EIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNT--KGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMMTMGS 175          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 41/146 (28.08%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVA-VSVHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +++ L+ E++A  KEAF + D +  G I+             +  EA++  LM   DVDG+ ++ + EF+A +S  LK   +++ L +AF  FD+N  G I   EL++ L    +   +  ++ ++ +V +D  G I+ ++FA ++
Sbjct:    1 MSQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV-SDGSGEINIKQFAALL 145          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 39/154 (25.32%), Postives = 71/154 (46.10%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMANDE----HLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKAGTD 477
            +++ L+ E+ A L+ AF   D  K G IN              + +A L  ++   D DG G + + EF  ++       + E     L +AF  +D+  +G+I    LR  L +  D    D ++ ++ ++D+D  G + ++EF  +M  G D
Sbjct:    1 MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMTGGDD 154          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CML26_ARATH1.786e-1130.15Probable calcium-binding protein CML26 OS=Arabidop... [more]
TNNCA_HOMAM2.332e-1127.59Troponin C, isoform 2A OS=Homarus americanus PE=1 ... [more]
TNNC3_DROME2.332e-1129.53Troponin C, isoform 3 OS=Drosophila melanogaster G... [more]
TNNC2_BALNU2.332e-1128.28Troponin C, isoform 2 OS=Balanus nubilis PE=1 SV=2[more]
CML2_ARATH2.332e-1130.22Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CALM_YEAST2.332e-1128.87Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CALGL_BOTIN3.046e-1129.93Calglandulin OS=Bothrops insularis PE=2 SV=1[more]
CML25_ARATH3.978e-1132.64Probable calcium-binding protein CML25 OS=Arabidop... [more]
CALM_KLULA5.195e-1128.08Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]
TNNC1_DROME6.785e-1125.32Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
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