FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig226 contig Ccv1_Contig226:4..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DGDG++ + EF+ +    +K   ++E + +AF  FD++  GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            + + LS E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K+  ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MTDALSEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 45/146 (30.82%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K+  ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 47/148 (31.76%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  +M A
Sbjct:    1 MAZZLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_LUMRU (Calmodulin OS=Lumbricus rubellus PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/146 (30.82%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CALM_RENRE7.485e-1831.51Calmodulin OS=Renilla reniformis PE=1 SV=2[more]
CALM_HALOK7.485e-1830.82Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALMB_HALRO7.485e-1830.82Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]
CALM_SPIOL1.277e-1731.76Calmodulin OS=Spinacia oleracea PE=1 SV=2[more]
CALM_LUMRU1.277e-1730.82Calmodulin OS=Lumbricus rubellus PE=2 SV=3[more]
CALM_LOCMI1.277e-1730.82Calmodulin OS=Locusta migratoria PE=1 SV=2[more]
CALM_DROME1.277e-1730.82Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_CAEEL1.277e-1730.82Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALM_APLCA1.277e-1730.82Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMA_HALRO1.277e-1730.82Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
back to top