FC932166

Overview
NameFC932166
Unique NameFC932166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig226 contig Ccv1_Contig226:4..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 44/146 (30.14%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +G+I   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 45/148 (30.41%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +G+I   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM A
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_PYTSP (Calmodulin OS=Pythium splendens PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 46/146 (31.51%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ E+++  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    LK    +E L +AF  FDR+  G+I  +ELR+ + +  +    + ++ ++ + D D DG+I+YEEF  MM A
Sbjct:    1 MADKLTEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ E+++  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    LK    +E L +AF  FDR+  G+I  +ELR+ + +  +    + ++ ++ + D D DG+I+YEEF  MM A
Sbjct:    1 MADKLTEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 46/146 (31.51%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+I+YEEF  MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 45/148 (30.41%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +A+ L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +K   ++E + +AF  FD++ +G+I   ELR  + +  +   ++ ++ ++ + D D DG+++YEEF  MM A
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMTA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: TNNC_TACTR (Troponin C OS=Tachypleus tridentatus PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 51/148 (34.46%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   31 AEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVS----VHLKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            AE LS E+V  L++AF+M D +K+G I+            Q   E DL+ L+   D DG G L + EF+A++    V     A  E L +AF  +D+   GFI + +LR+ L    D   ED ++ ++ ++DTD  G + ++EF  MM
Sbjct:    4 AEDLSKEQVQMLRKAFDMFDRDKKGVIHTNMVSTILRTLGQTFEEKDLKDLIAEIDQDGSGELEFEEFMALAARFLVEEDAEAMQEELREAFRLYDKQGQGFINVSDLRDILRALDDKLTEDELDEMIAEIDTDGSGTVDFDEFMEMM 151          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_SOLLC (Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 47/148 (31.76%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVH-LKKMANDEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMMKA 468
            +AE L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D D +G++ + EF+ +    +K   ++E L +AF  FD++++GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++YEEF  MM A
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLA 148          
BLAST of FC932166 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 45/148 (30.41%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   28 VAEFLSVEEVAGLKEAFEMMDTNKRGKINXXXXXXXXXXXXQNIPEADLQILMEAADVDGDGSLTYGEFVAVSVHLKKMAN---DEHLHKAFSFFDRNRSGFIEIEELRNALNDEVDTSGEDVINAIMHDVDTDKDGRISYEEFAVMM 462
            + + L+ E++A  KEAF + D +  G I             QN  EA+LQ ++   D DG+G++ + EF+ +    +KMA+   +E + +AF  FD++ +GFI   ELR+ + +  +   ++ ++ ++ + D D DG+++Y+EF  MM
Sbjct:    1 MVDSLTEEQIAEFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA--RKMADTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDEFVKMM 146          
The following BLAST results are available for this feature:
BLAST of FC932166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CALM_STIJA2.844e-1730.14Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_ELEEL2.844e-1730.41Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_PYTSP3.715e-1731.51Calmodulin OS=Pythium splendens PE=2 SV=1[more]
CALM_PLAFA3.715e-1732.43Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_PLAF73.715e-1732.43Calmodulin OS=Plasmodium falciparum (isolate 3D7) ... [more]
CALM_PHYIN3.715e-1731.51Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]
CALM_OREMO3.715e-1730.41Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
TNNC_TACTR4.851e-1734.46Troponin C OS=Tachypleus tridentatus PE=1 SV=1[more]
CALM_SOLLC4.851e-1731.76Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 S... [more]
CALM_PHYPO4.851e-1730.41Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC34205D01EF PostHarveN Citrus clementina cDNA clone C34205D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932166 ID=FC932166; Name=FC932166; organism=Citrus clementina; type=EST; length=625bp
CAAGCTTAAAAAAGAGCTCTACAAGTTGTGGCTGAGTTTTTGTCTGTGGA
GGAAGTGGCTGGCTTAAAGGAGGCATTTGAGATGATGGACACTAACAAGA
GAGGCAAGATAAACCTTGAGGAGCTAAGGCTTGGGTTGCTAAAAGGTGGC
CAAAATATTCCTGAGGCAGATCTTCAAATCCTCATGGAAGCTGCCGATGT
TGATGGTGACGGAAGTTTGACTTATGGAGAGTTTGTCGCAGTTTCTGTTC
ACCTTAAAAAGATGGCCAATGATGAACATCTGCATAAAGCTTTTTCATTC
TTTGATCGAAATCGGAGTGGTTTCATAGAGATTGAAGAGCTGAGAAATGC
CTTAAATGATGAAGTTGACACCAGTGGTGAAGATGTTATCAATGCCATTA
TGCATGATGTTGATACGGACAAGGATGGTCGCATAAGTTACGAGGAGTTT
GCCGTGATGATGAAGGCAGGTACTGATTGGAGAAAGGCGTCAAGGCAATA
TTCACGGGAAAGATTCAACAGTATAAGCTTGAAGTTAATGAGGGAGGAGG
GTTTACAGTTAGCCAACTGAGGGTAAAAGAACTGAAAGTTATCCGACGGG
CTAGCATATCGAGAAATTCACTTCT
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