FC932168

Overview
NameFC932168
Unique NameFC932168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12223 contig Ccv1_Contig12223:25..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: TDCF_SHIFL (Protein tdcF OS=Shigella flexneri GN=tdcF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 48/126 (38.10%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  231 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECIA 599
            +K+ + T +AP A+GPY Q +   ++VF SG + + P+TG+  +D ++DQ    L+N+  I+ A+G     ++K T+ + DL DF T+NE+Y ++F    +  P R+  QVA LP D ++EIE IA
Sbjct:    1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIA 125          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: TDCF_ECOLI (Protein tdcF OS=Escherichia coli (strain K12) GN=tdcF PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 48/126 (38.10%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  231 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECIA 599
            +K+ + T +AP A+GPY Q +   ++VF SG + + P+TG+  +D ++DQ    L+N+  I+ A+G     ++K T+ + DL DF T+NE+Y ++F    +  P R+  QVA LP D ++EIE IA
Sbjct:    1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIA 125          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: TDCF_ECOL6 (Protein tdcF OS=Escherichia coli O6 GN=tdcF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 48/126 (38.10%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  231 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECIA 599
            +K+ + T +AP A+GPY Q +   ++VF SG + + P+TG+  +D ++DQ    L+N+  I+ A+G     ++K T+ + DL DF T+NE+Y ++F    +  P R+  QVA LP D ++EIE IA
Sbjct:    1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIA 125          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: YVN1_AZOVI (UPF0076 protein in vnfA 5'region OS=Azotobacter vinelandii PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  234 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 605
            K  + T+KAPAA+G YSQAI+A + V++SG + L P T + V    E QT +V +N+  +++A+G  ++ +VK  I L DL  F   NE   +YF  P PARA    A+LP  A+VE++ I  L
Sbjct:    3 KSVINTDKAPAAIGTYSQAIRAGDTVYLSGQIPLDPGTMELVEGDFEAQTVRVFENLKAVVEAAGGSFADIVKLNIFLTDLAHFANGNECMGRYFAQPYPARAAIACASLPRGAQVEMDGILVL 126          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: MMF1_YEAST (Protein MMF1, mitochondrial OS=Saccharomyces cerevisiae GN=MMF1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  243 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 611
            V T  AP A   YSQA+KANN V+VSG +   P+  K V  +I ++ EQV +N+  IL  S +   ++VK  + LAD+K+F   N +YAK+F +  PAR+   VA+LPL+  +E+E IA   N
Sbjct:   24 VSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPDN-KPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAVEKN 145          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: MMF1_SCHPO (Protein mmf1, mitochondrial OS=Schizosaccharomyces pombe GN=mmf1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  264 AALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLD---ARVEIECIA 599
            ++ GPY+QAIKAN +++ SG + +    GK +  T+ DQT Q L N+ E+L  +G+  + +VK  I LAD+ DF  VN++Y +  P P PAR+   V  +PL     ++EIECIA
Sbjct:   48 SSAGPYNQAIKANGVIYCSGQIPVA--NGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECIA 160          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: MMF2_SCHPO (Protein mmf2, mitochondrial OS=Schizosaccharomyces pombe GN=mmf2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  273 GPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDA---RVEIECIAA 602
            GPY+QA+K+  L+F SG   +  + G FV  TI++QT   ++N+ E+L+ +G+    +VK  I L D+ DF  +NE+Y +  P P PAR T     +PL +   ++EIECIAA
Sbjct:   15 GPYNQAVKSGGLIFCSGQAAV--KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIAA 125          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: YJGF_SHIFL (UPF0076 protein yjgF OS=Shigella flexneri GN=yjgF PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  231 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARVEIECIA 599
            + + + T  APAA+GPY Q +   N++  SG + + P+TG+  +D +  Q  Q L N+  I++A+G     +VKTT+ + DL DF TVN  Y  +F    +  PAR+  +VA LP D ++EIE IA
Sbjct:    1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIA 125          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: YJGF_ECOLI (UPF0076 protein yjgF OS=Escherichia coli (strain K12) GN=yjgF PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  231 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARVEIECIA 599
            + + + T  APAA+GPY Q +   N++  SG + + P+TG+  +D +  Q  Q L N+  I++A+G     +VKTT+ + DL DF TVN  Y  +F    +  PAR+  +VA LP D ++EIE IA
Sbjct:    1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIA 125          
BLAST of FC932168 vs. ExPASy Swiss-Prot
Match: YJGF_ECOL6 (UPF0076 protein yjgF OS=Escherichia coli O6 GN=yjgF PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  231 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARVEIECIA 599
            + + + T  APAA+GPY Q +   N++  SG + + P+TG+  +D +  Q  Q L N+  I++A+G     +VKTT+ + DL DF TVN  Y  +F    +  PAR+  +VA LP D ++EIE IA
Sbjct:    1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIA 125          
The following BLAST results are available for this feature:
BLAST of FC932168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TDCF_SHIFL5.278e-2138.10Protein tdcF OS=Shigella flexneri GN=tdcF PE=3 SV=... [more]
TDCF_ECOLI5.278e-2138.10Protein tdcF OS=Escherichia coli (strain K12) GN=t... [more]
TDCF_ECOL65.278e-2138.10Protein tdcF OS=Escherichia coli O6 GN=tdcF PE=3 S... [more]
YVN1_AZOVI9.003e-2141.94UPF0076 protein in vnfA 5'region OS=Azotobacter vi... [more]
MMF1_YEAST2.620e-2043.09Protein MMF1, mitochondrial OS=Saccharomyces cerev... [more]
MMF1_SCHPO4.468e-2041.74Protein mmf1, mitochondrial OS=Schizosaccharomyces... [more]
MMF2_SCHPO7.622e-2040.71Protein mmf2, mitochondrial OS=Schizosaccharomyces... [more]
YJGF_SHIFL1.698e-1938.89UPF0076 protein yjgF OS=Shigella flexneri GN=yjgF ... [more]
YJGF_ECOLI1.698e-1938.89UPF0076 protein yjgF OS=Escherichia coli (strain K... [more]
YJGF_ECOL61.698e-1938.89UPF0076 protein yjgF OS=Escherichia coli O6 GN=yjg... [more]

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Properties
Property NameValue
Genbank descriptionC34205D03EF PostHarveN Citrus clementina cDNA clone C34205D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932168 ID=FC932168; Name=FC932168; organism=Citrus clementina; type=EST; length=701bp
CGCTCGAGGGAAACTGAGAGAGCAACAGCGACAAAGACGAAGACATGGCG
TGGTGTTCATTACGGTCGTTGAATGTCCCAACCATCGACATGGGCGCACT
GCGCACCCGCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTCGGTCG
CCGGGTCCAGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTCCCTTT
GCTTGCTTATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTTGTGAC
TAACAAGGCTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAAAGCAA
ATAACCTCGTTTTTGTCTCTGGGGTTCTTGGTTTAGTTCCAGAGACTGGG
AAATTTGTCTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTTAAAAA
TATTGGGGAAATACTGAAAGCTAGCGGCGCTGACTATTCCTCTGTGGTTA
AGACAACAATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGAATGAG
ATCTATGCTAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACATATCA
AGTAGCAGCACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCATTGCAG
CCCTTCCCAATGCTTGATTGGGGTGAAATTCTTCCAGGATAATCGAATAA
AGGGGAAGAAAGCACACCTTTGAGGACAGGATTTTGGAGGCATTTTCTCA
T
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