FC932173

Overview
NameFC932173
Unique NameFC932173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932173 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 50/187 (26.74%), Postives = 86/187 (45.99%), Query Frame = 1
Query:  154 LVCDNGTGMVKAGFAGD-DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL--KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 699
            ++ DNG+  +K+   GD + P A+   I GR            K  YVG +    +   +L  K P E G + NWD  + +W + FYN       +  +LLT+ PL        + Q++FE +     +    A L  ++SG+     +V+D+G   +H  P+  G      I R+++ G+ +T+ L
Sbjct:    1 MILDNGSYAIKSDRTGDAETPNAL---IRGR-----------DKTVYVGQDLTKCKDYASLVFKRPSEKGQLINWDIQKAVWDNLFYNPQTGVDTDSSLLLTQYPLTLPQVSANIDQVVFEEYGFEQYHRTEAANLVAWSSGQCLDACLVVDAGFNATHVTPVLFGQVHEPGIRRVNVGGKTMTNLL 173          
BLAST of FC932173 vs. ExPASy Swiss-Prot
Match: ARP6_ASPFU (Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 59/231 (25.54%), Postives = 103/231 (44.59%), Query Frame = 1
Query:  130 ADAEDIQPL-----VCDNGTGMVKAGFAGDDAPR----------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV--------APEEHPVLLTEAPLNPKANREKMTQIMFETFN-------VPAMYVAIQAVLSLYA-----------SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 699
            A A  +Q L     + DNG   +KAG+A    P           +  P+ + + R   + +G  Q ++ V D  +     +  + P+E G + NW+  ++IW + F++E  V        +PE+  ++LTEAP      ++   +I+ E +        V  +  A   V SL+            S +   +V+DSG   +   P+Y+G  +  AI RLD+ G+ LT+ L
Sbjct:   12 ASAPKVQSLPEKTFIIDNGAYTLKAGYAPGFPPPEDLGQALSACSTIPNAIAKTRGNRIYIG-AQLNSQVTDWNE-----MVFRRPVEKGYIVNWEAQKEIWDNAFFDEKTVRSKDLRIESPEDTTLVLTEAPNALPTLQKNADEIVMEEWGFGGYVRFVGPVLNAWNEVQSLFGDPIGQDSSSPISPKQCLLVVDSGYSHTTVTPVYKGQPIQRAIRRLDIGGKHLTNYL 236          
BLAST of FC932173 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 49/198 (24.75%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  154 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 678
            LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE + +PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G
Sbjct:    8 LVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGG 204          
The following BLAST results are available for this feature:
BLAST of FC932173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP6_YARLI2.903e-1126.74Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP6_ASPFU6.467e-1125.54Actin-like protein arp6 OS=Aspergillus fumigatus G... [more]
ARP5_DROPS8.446e-1124.75Actin-related protein 5 OS=Drosophila pseudoobscur... [more]

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Properties
Property NameValue
Genbank descriptionC34205D08EF PostHarveN Citrus clementina cDNA clone C34205D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932173 ID=FC932173; Name=FC932173; organism=Citrus clementina; type=EST; length=700bp
GGACTACTACATTTTTAATCTCTCGGCAGTACCAAATACAGAGCGATAGA
GAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCG
TCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAA
CCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGG
AGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGAC
ACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGAT
GAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCA
CGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACCT
TCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACT
GAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTAT
GTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTC
TATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGT
GATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTCCTCA
TGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGA
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