FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932177_ssr85 microsatellite FC932177_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7386 contig Ccv1_Contig7386:203..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + + +ALR +F+  AQ++              KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:    3 SALARPAGAALRRSFSTSAQNNA-------------KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + + +ALR +F+  AQ++              KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:    3 SALARPAGAALRRSFSTSAQNNA-------------KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV N  GV AD+SH +T + V  F G  +L  AL G+++V+IPAGV  K G
Sbjct:   43 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPG 125          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 60/118 (50.85%), Postives = 76/118 (64.41%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + + + LR +F+  AQ++              KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:    3 SALARPASAVLRRSFSTSAQNNA-------------KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 2
Query:  380 ALRSTFARKAQSSEQRPQN-ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            ++RS  +R + S+    ++ A +     KVAVLGAAGGIGQPLALL+K++PLVS L LYD+    GVAAD+ H NT S+V  + G E+L  AL+G +VV+IPAGV  K G
Sbjct:    8 SVRSAVSRSSSSNRLLSRSFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPG 117          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 2
Query:  452 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            + FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV +D+SH +T + V  F G ++L  AL G+++V+IPAGV  K G
Sbjct:   40 SGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPG 124          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  377 SALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            +ALR +F+  AQ++              KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:   11 AALRRSFSTSAQNNA-------------KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 2
Query:  371 SCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S S ++    R+  +SE  P          KV +LGAAGGIGQPL+LL+K++PLVS+L LYD+ N  GVAAD+ H NT SQV  + G ++L  AL+G ++V+IPAGV  K G
Sbjct:    9 SASPVKQGLLRRGFASESVPDR--------KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPG 112          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S  AR A ++ +R  +    Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:    3 SALARPAGAALRRSFST-SXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.942e-21
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            FKVA+LGAAGGIGQ L+LL+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++V+IPAGV  K G
Sbjct:   47 FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPG 129          
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDHM_MOUSE1.756e-2251.69Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHM_BOVIN2.294e-2251.69Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHG2_ARATH2.294e-2262.65Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHM_PONAB2.996e-2250.85Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_CITLA2.996e-2251.82Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHG_SOYBN2.996e-2260.00Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHM_RAT3.913e-2253.64Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM2_ARATH3.913e-2249.11Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM_PIG6.675e-2255.66Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHG2_BRANA1.942e-2161.45Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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