FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932177_ssr85 microsatellite FC932177_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7386 contig Ccv1_Contig7386:203..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.942e-21
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            FKVA+LGAAGGIGQ L+LL+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++V+IPAGV  K G
Sbjct:   47 FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPG 129          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            FKVA+LGAAGGIGQ L+LL+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++V+IPAG+  K G
Sbjct:   43 FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPG 125          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  392 TFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            T  + A +S  R  +      + KVA+LGAAGGIGQPL LL+K  PLV+ L LYDV+N  GVAADLSH ++ ++V   TGP+EL +A++  +V+VIPAGV  K G
Sbjct:    7 TLVQAAANSGLRAVSVRHSSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPG 111          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  323 VTSVICESDTSFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            + + +  S +S + K +  A R   A    S + R           KVAVLGAAGGIGQPL++L+KM+  VS+L LYD+    GVAAD+SH NT +QV  F   + LA AL+G ++V+IPAGV  K G
Sbjct:   29 IVAAMASSTSSAMAKWAAQAARGFAAAAPSSGKGR-----------KVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKPG 144          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  479 AAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            A+GGIG+PL+LL+K SPL+S L LYD+ +VKGVAADLSH  T + V    GP ELA  L G NVV+IPAG+  K G
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPG 76          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  455 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE-LASALKGVNVVVIPAGVQEKLG 706
            +FKVAVLGA GGIGQPL++L+K++  VS L L+D+    GVAAD+ H NT S V+ +   ++ L  AL G +VV+IPAGV  K G
Sbjct:   28 AFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPG 112          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFT--GPEELASALKGVNVVVIPAGVQEKLG 706
            +KV VLGA GGIGQPL+LL+K++  V+ L LYD+   KGVA DLSH  T S V  FT   P+ L +ALK  ++V+IPAGV  K G
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPG 102          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVA+LGA+GG+GQPL+LL+K+SP VS L LYD+   +G+  DLSH NT S  + +   + + + L    VV+IPAGV  K G
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPG 83          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ L+LL+K   P  S L LYDV   V GVA DLSH  T  +V  F G ++LASAL G ++V+IPAGV  K G
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPG 84          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G NVV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGANVVLISAGVARKPG 84          
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDHG1_BRANA1.942e-2161.45Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH2.536e-2160.24Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHM_CAEEL5.650e-2151.43Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_CHLRE6.907e-1944.53Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHM_SCHMA1.539e-1860.53Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDHM_SCHPO6.465e-1752.94Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_YEAST5.473e-1655.29Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDHP_YEAST2.716e-1550.00Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDH_IDILO6.690e-1459.52Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_ECOLU4.336e-1357.14Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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