FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+  SAL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATSALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F G E+   AL+G NVV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTEVKIKGFAG-EDATPALEGANVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ L+LL+K   P  + L LYDV   V GVA DLSH  T  +V  F G ++LA AL G ++V+IPAGV  K G
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGTELALYDVAPVVPGVAVDLSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K+  P  S L LYD+  V  GVAAD+SH  T  +V  F G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAG-EDPTPALQGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+  +AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAG-EDPTAALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+  +AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAG-EDPTAALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+  +AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVIPGVAVDLSHIPTAVEVKGFAG-EDPTAALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ERWT9 (Malate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KV VLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   ALKG +VV+I AGV  K G
Sbjct:    2 KVTVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTSVKIAGFSG-EDATPALKGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_YERE8 (Malate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F+G E+   ALKG ++V+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSG-EDATPALKGADIVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K+  P  S+L LYDV  V  GVA DLSH  T   V  F G +  + ALKG ++V+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSSLSLYDVAPVTPGVAKDLSHIPTDVVVEGFAGTDP-SEALKGADIVLISAGVARKPG 84
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDH_ECOLC4.336e-1357.14Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_PHOLL5.663e-1357.14Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_PSEA67.397e-1357.14Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDH_PASMU7.397e-1357.14Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_SHEPW9.660e-1357.14Malate dehydrogenase OS=Shewanella piezotolerans (... [more]
MDH_SHEPA9.660e-1357.14Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_SHEHH9.660e-1357.14Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_ERWT99.660e-1355.95Malate dehydrogenase OS=Erwinia tasmaniensis (stra... [more]
MDH_YERE81.262e-1255.95Malate dehydrogenase OS=Yersinia enterocolitica se... [more]
MDH_MANSM1.262e-1257.14Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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