FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932177_ssr85 microsatellite FC932177_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7386 contig Ccv1_Contig7386:203..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHIB3 (Malate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAG-EDPTPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAG-EDPTPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  T  +V  F G E+ + ALK  +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAG-EDPSPALKDADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDH_SHIB31.648e-1255.95Malate dehydrogenase OS=Shigella boydii serotype 1... [more]
MDH_SHESH1.648e-1257.14Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_SHELP1.648e-1257.14Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_PROMH1.648e-1258.33Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_KLEP71.648e-1255.95Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_KLEP31.648e-1255.95Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_ECOUT1.648e-1255.95Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM1.648e-1255.95Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOSE1.648e-1255.95Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI1.648e-1255.95Malate dehydrogenase OS=Escherichia coli (strain K... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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