FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932177_ssr85 microsatellite FC932177_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7386 contig Ccv1_Contig7386:203..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCG-EDPTPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALPC (Malate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALPB (Malate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALPA (Malate dehydrogenase OS=Salmonella paratyphi A GN=mdh PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALNS (Malate dehydrogenase OS=Salmonella newport (strain SL254) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALHS (Malate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDH_SHEAM2.152e-1257.14Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_SALTY2.152e-1255.95Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI2.152e-1255.95Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]
MDH_SALSV2.152e-1255.95Malate dehydrogenase OS=Salmonella schwarzengrund ... [more]
MDH_SALPK2.152e-1255.95Malate dehydrogenase OS=Salmonella paratyphi A (st... [more]
MDH_SALPC2.152e-1255.95Malate dehydrogenase OS=Salmonella paratyphi C (st... [more]
MDH_SALPB2.152e-1255.95Malate dehydrogenase OS=Salmonella paratyphi B (st... [more]
MDH_SALPA2.152e-1255.95Malate dehydrogenase OS=Salmonella paratyphi A GN=... [more]
MDH_SALNS2.152e-1255.95Malate dehydrogenase OS=Salmonella newport (strain... [more]
MDH_SALHS2.152e-1255.95Malate dehydrogenase OS=Salmonella heidelberg (str... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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