FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932177_ssr85 microsatellite FC932177_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7386 contig Ccv1_Contig7386:203..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALEP (Malate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFAG-EDATPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSG-EDAKPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAV+GAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  TP  +  + G E+   AL+G +VV+I AGV  K G
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCG-EDPTPALEGADVVLISAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAV+GAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  TP  +  + G E+   AL+G +VV++ AGV  K G
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAG-EDPTPALEGADVVLVSAGVARKPG 84
[Close]
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G ++ + AL+G +VV+I AGV  K G
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAG-QDPSPALEGADVVLISAGVARKPG 84
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDH_SALG22.152e-1255.95Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDH_SALEP2.152e-1255.95Malate dehydrogenase OS=Salmonella enteritidis PT4... [more]
MDH_SALCH2.152e-1255.95Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_SALAR2.152e-1255.95Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_SALA42.152e-1255.95Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_ESCF32.152e-1255.95Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDH_ENTS82.152e-1255.95Malate dehydrogenase OS=Enterobacter sakazakii (st... [more]
MDH_ALISL2.152e-1255.95Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDH_VIBCH2.811e-1254.76Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SHEWM2.811e-1255.95Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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