FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACAC (Tryptophan synthase alpha chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE---SLQKEAMKNKIELVLFT 663
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE +    L +EA    I LV  T
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACAA (Tryptophan synthase alpha chain OS=Bacillus anthracis (strain A0248) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE---SLQKEAMKNKIELVLFT 663
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE +    L +EA    I LV  T
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_ROSDO (Tryptophan synthase alpha chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            + F +L K GK A + Y+ AGD +  T+ E +K L + G D+IELG+P++DP+ADGP IQ A  R+L  G      L + +       + PI +  YYNPI  RGVD F++  +D GI GL+V D+P EE   L
Sbjct:    6 DKFAQLAKDGKKAFVAYVMAGDPNYETSLEVVKGLPAAGVDVIELGLPFTDPMADGPTIQLAGQRALEAGMTLQKTLDLARAFRKDDQTTPIVMMGYYNPIYSRGVDRFLAEAKDAGIDGLIVVDLPPEEDSEL 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU2 (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F +LK +G+ AL+ +ITAGD    T+ + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M+ E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A  + I+ +  T
Sbjct:    4 LEHRFAQLKTEGRAALVTFITAGDPGYDTSLKVLKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALDAGQTLQKTLQMVSEFRVDDQTTPIVLMGYYNPIHRFGVEAFVAQAKEAGVDGLIIVDLPPEHDAELATPAQASGIDFIRLT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAB (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 58/151 (38.41%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F +LK++ + AL+ ++TAGD D +++ E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E     S  P+ L  Y+NPI   GV+ F++  +++G+ GL+V D+P E  E L   A    ++ +  T
Sbjct:    4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGLDFIRLT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_OCHA4 (Tryptophan synthase alpha chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T+ + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETSLKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLHMAAEFRKEDNTTPIVMMGYYNPIYIYGVERFLADAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURP8 (Tryptophan synthase alpha chain OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 636
            +  TF  L  QGK  LIP++TAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G +   +L+ +K         P+ L  Y NPI + G D F +  +D G+ G++V D P EE+ +   E MK
Sbjct:    4 IQSTFAALAAQGKKGLIPFMTAGDPDPARTVEFMHALAKGGADVIELGVPFSDPMADGPVIQQSSERALAKGVSLRHVLADVKRFRESDDKTPVVLMGYANPIERMGADAFAAAAKDAGVDGVLVVDYPPEESANF-AETMK 144          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURA4 (Tryptophan synthase alpha chain OS=Burkholderia ambifaria (strain MC40-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG    ++L+ +K       + P+ L  Y NPI + GVD F +  +  G+ G++V D P EE
Sbjct:    4 IQQTFAALAEQGRKGLIPFITAGDPDPAKTVEFMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKSVLADVKRFRDTNQTTPVVLMGYANPIERMGVDAFATEAQAAGVDGVLVVDYPPEE 135          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RALPJ (Tryptophan synthase alpha chain OS=Ralstonia pickettii (strain 12J) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 58/138 (42.03%), Postives = 85/138 (61.59%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQK 624
            +A+TF++L  QG+  LIP+ITAGD     T + +  L   GS++IELGVP+SDP+ADGPVIQ A+ R+LA+      +L  ++      ++ P+ L  Y NPI + GVD F     + G+ G++V D P EE E+  K
Sbjct:    4 IAQTFSQLSAQGRKGLIPFITAGDPYPEMTVDLMHALVKGGSNVIELGVPFSDPMADGPVIQRASERALAKKVGLRTVLEYVRAFRATDLTTPVVLMGYANPIERMGVDAFAKAASEAGVDGVLVVDYPPEECEAFAK 141          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPW (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain W619) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L + F  LK +G+ AL+ ++TAGD     + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G N    L M++E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A    I+ +  T
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQNLAKTLQMVREFRVDNQATPIVLMGYYNPIHRFGVEKFVAEAKEAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLT 154          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_BACAC3.179e-2540.28Tryptophan synthase alpha chain OS=Bacillus anthra... [more]
TRPA_BACAA3.179e-2540.28Tryptophan synthase alpha chain OS=Bacillus anthra... [more]
TRPA_ROSDO4.152e-2542.54Tryptophan synthase alpha chain OS=Roseobacter den... [more]
TRPA_PSEU24.152e-2539.07Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_PSEAB4.152e-2538.41Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_OCHA44.152e-2540.26Tryptophan synthase alpha chain OS=Ochrobactrum an... [more]
TRPA_BURP84.152e-2542.96Tryptophan synthase alpha chain OS=Burkholderia ph... [more]
TRPA_BURA44.152e-2544.70Tryptophan synthase alpha chain OS=Burkholderia am... [more]
TRPA_RALPJ5.423e-2542.03Tryptophan synthase alpha chain OS=Ralstonia picke... [more]
TRPA_PSEPW5.423e-2538.41Tryptophan synthase alpha chain OS=Pseudomonas put... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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