FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPF (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F  LK+Q + AL+ ++TAGD D  T+   LK L   G+D+IELG+P++DP+ADGP IQ A  R+L    N    L M++E     S  P+ L  Y+NPI K GV+ F++  ++ G+ GL+V D+P E    L   A    I+ +  T
Sbjct:    4 LQTRFAELKEQNRAALVTFVTAGDPDYDTSLAILKGLPKAGADVIELGMPFTDPMADGPAIQLANIRALGAKQNLTKTLQMVREFREGNSDTPLVLMGYFNPIHKFGVERFIAEAKEAGVDGLIVVDMPPEHNSELCDPAQAAGIDFIRLT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURTA (Tryptophan synthase alpha chain OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D S T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G     +L  ++    +    P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPSRTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLRRVLDDVRRFRERDRQTPVVLMGYANPIERMGEDAFAAAARDAGVDGVLVVDYPPEES 136          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUSU (Tryptophan synthase alpha chain OS=Brucella suis GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T  + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUSI (Tryptophan synthase alpha chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T  + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUC2 (Tryptophan synthase alpha chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T  + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUAB (Tryptophan synthase alpha chain OS=Brucella abortus GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T  + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUA2 (Tryptophan synthase alpha chain OS=Brucella abortus (strain 2308) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T  + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUA1 (Tryptophan synthase alpha chain OS=Brucella abortus (strain S19) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            T  +   F  LK +G+ AL+ Y   GD DL T  + +K L   G+D+IELG+P+SDP+ADGP IQAA  R+L  G      L M  E   +  + PI +  YYNPI   GV+ F++  +  G+ GL+V D+P E    L   AMK  I  +  T
Sbjct:    2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACWK (Tryptophan synthase alpha chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE 612
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+ +  + G+ G++VPD+P EE +
Sbjct:   11 ENGKKAFIPYVMGGDGGLEKLKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTLKGIFQALIEVRQEVQIPFVLMTYLNPVLAFGKERFIESCLEAGVDGIIVPDLPYEEQD 134          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACC7 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain AH187) GN=trpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE 612
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G ++F+    + G+ G++VPD+P EE +
Sbjct:   11 ENGKKAFIPYVMGGDGGLEKLKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDGGVTLKGIFQALAEVRKEVQIPFVLMTYLNPVLAFGKEHFIERCLEAGVDGIIVPDLPYEEQD 134          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_PSEPF5.423e-2539.74Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]
TRPA_BURTA5.423e-2544.36Tryptophan synthase alpha chain OS=Burkholderia th... [more]
TRPA_BRUSU5.423e-2540.26Tryptophan synthase alpha chain OS=Brucella suis G... [more]
TRPA_BRUSI5.423e-2540.26Tryptophan synthase alpha chain OS=Brucella suis (... [more]
TRPA_BRUC25.423e-2540.26Tryptophan synthase alpha chain OS=Brucella canis ... [more]
TRPA_BRUAB5.423e-2540.26Tryptophan synthase alpha chain OS=Brucella abortu... [more]
TRPA_BRUA25.423e-2540.26Tryptophan synthase alpha chain OS=Brucella abortu... [more]
TRPA_BRUA15.423e-2540.26Tryptophan synthase alpha chain OS=Brucella abortu... [more]
TRPA_BACWK5.423e-2541.13Tryptophan synthase alpha chain OS=Bacillus weihen... [more]
TRPA_BACC75.423e-2541.13Tryptophan synthase alpha chain OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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