FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPF (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 L F LK+Q + AL+ ++TAGD D T+ LK L G+D+IELG+P++DP+ADGP IQ A R+L N L M++E S P+ L Y+NPI K GV+ F++ ++ G+ GL+V D+P E L A I+ + T Sbjct: 4 LQTRFAELKEQNRAALVTFVTAGDPDYDTSLAILKGLPKAGADVIELGMPFTDPMADGPAIQLANIRALGAKQNLTKTLQMVREFREGNSDTPLVLMGYFNPIHKFGVERFIAEAKEAGVDGLIVVDMPPEHNSELCDPAQAAGIDFIRLT 154
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURTA (Tryptophan synthase alpha chain OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609 + TF L QG+ LIP+ITAGD D S T E + L G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G +L ++ + P+ L Y NPI + G D F + RD G+ G++V D P EE+ Sbjct: 4 IQNTFAALAAQGRKGLIPFITAGDPDPSRTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLRRVLDDVRRFRERDRQTPVVLMGYANPIERMGEDAFAAAARDAGVDGVLVVDYPPEES 136
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUSU (Tryptophan synthase alpha chain OS=Brucella suis GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 T + F LK +G+ AL+ Y GD DL T + +K L G+D+IELG+P+SDP+ADGP IQAA R+L G L M E + + PI + YYNPI GV+ F++ + G+ GL+V D+P E L AMK I + T Sbjct: 2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUSI (Tryptophan synthase alpha chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 T + F LK +G+ AL+ Y GD DL T + +K L G+D+IELG+P+SDP+ADGP IQAA R+L G L M E + + PI + YYNPI GV+ F++ + G+ GL+V D+P E L AMK I + T Sbjct: 2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUC2 (Tryptophan synthase alpha chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 T + F LK +G+ AL+ Y GD DL T + +K L G+D+IELG+P+SDP+ADGP IQAA R+L G L M E + + PI + YYNPI GV+ F++ + G+ GL+V D+P E L AMK I + T Sbjct: 2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUAB (Tryptophan synthase alpha chain OS=Brucella abortus GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 T + F LK +G+ AL+ Y GD DL T + +K L G+D+IELG+P+SDP+ADGP IQAA R+L G L M E + + PI + YYNPI GV+ F++ + G+ GL+V D+P E L AMK I + T Sbjct: 2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUA2 (Tryptophan synthase alpha chain OS=Brucella abortus (strain 2308) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 T + F LK +G+ AL+ Y GD DL T + +K L G+D+IELG+P+SDP+ADGP IQAA R+L G L M E + + PI + YYNPI GV+ F++ + G+ GL+V D+P E L AMK I + T Sbjct: 2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BRUA1 (Tryptophan synthase alpha chain OS=Brucella abortus (strain S19) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663 T + F LK +G+ AL+ Y GD DL T + +K L G+D+IELG+P+SDP+ADGP IQAA R+L G L M E + + PI + YYNPI GV+ F++ + G+ GL+V D+P E L AMK I + T Sbjct: 2 TTRIDTKFAELKAEGRPALVTYFMGGDPDLETALKVMKALPKAGADVIELGMPFSDPMADGPAIQAAGLRALNAGQTLAKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLT 155
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACWK (Tryptophan synthase alpha chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE 612 + GK A IPY+ GD L E ++ LD G+ I+E+G+P+SDP+ADGP IQ A R+L G I L EV ++ P L TY NP+L G + F+ + + G+ G++VPD+P EE + Sbjct: 11 ENGKKAFIPYVMGGDGGLEKLKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTLKGIFQALIEVRQEVQIPFVLMTYLNPVLAFGKERFIESCLEAGVDGIIVPDLPYEEQD 134
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACC7 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain AH187) GN=trpA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25 Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE 612 + GK A IPY+ GD L E ++ LD G+ I+E+G+P+SDP+ADGP IQ A R+L G I L EV ++ P L TY NP+L G ++F+ + G+ G++VPD+P EE + Sbjct: 11 ENGKKAFIPYVMGGDGGLEKLKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDGGVTLKGIFQALAEVRKEVQIPFVLMTYLNPVLAFGKEHFIERCLEAGVDGIIVPDLPYEEQD 134 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |