FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALSV (Tryptophan synthase alpha chain OS=Salmonella schwarzengrund (strain CVM19633) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPB (Tryptophan synthase alpha chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALNS (Tryptophan synthase alpha chain OS=Salmonella newport (strain SL254) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALHS (Tryptophan synthase alpha chain OS=Salmonella heidelberg (strain SL476) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALG2 (Tryptophan synthase alpha chain OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALEP (Tryptophan synthase alpha chain OS=Salmonella enteritidis PT4 (strain P125109) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALDC (Tryptophan synthase alpha chain OS=Salmonella dublin (strain CT_02021853) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALA4 (Tryptophan synthase alpha chain OS=Salmonella agona (strain SL483) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_ERWT9 (Tryptophan synthase alpha chain OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 48/141 (34.04%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F RL ++ + A +P++T GD     + + +  L + G+D +ELG+P+SDPLADGP IQ A  R+ A G        ML  +  +    PI L  Y N +   G+D+F +  + +G+  ++V DVP+EE+   ++ AM++ +
Sbjct:    8 FKRLAEKQEGAFVPFVTLGDPTPELSLQIIDALVAGGADALELGIPFSDPLADGPTIQNANLRAFAAGVTPEHCFDMLAAIRQKYPDMPIGLLMYANLVFSNGIDSFYARCQQVGVDSVLVADVPVEESAPFRQAAMRHNV 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHRVO (Tryptophan synthase alpha chain OS=Chromobacterium violaceum GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ 621
            +A  F  L   GK ALIP+ITAGD     T   +  L   G+DIIELGVP+SDP+ADGPVIQ A+ R+L        +L M+ E      + P+ L  Y NP+   G   F S  +  G+ G++  D P EE   L+
Sbjct:    4 IANCFAELA--GKKALIPFITAGDPHPGLTVSLMHGLVDGGADIIELGVPFSDPMADGPVIQRASERALKHKVGLRHVLEMVAEFRRDNATTPVVLMGYLNPLCAMGYTEFASRAKAAGVDGVLTVDCPPEEAAELE 138          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_SALSV8.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella schw... [more]
TRPA_SALPB8.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella para... [more]
TRPA_SALNS8.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella newp... [more]
TRPA_SALHS8.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella heid... [more]
TRPA_SALG28.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella gall... [more]
TRPA_SALEP8.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella ente... [more]
TRPA_SALDC8.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella dubl... [more]
TRPA_SALA48.959e-2034.97Tryptophan synthase alpha chain OS=Salmonella agon... [more]
TRPA_ERWT98.959e-2034.04Tryptophan synthase alpha chain OS=Erwinia tasmani... [more]
TRPA_CHRVO8.959e-2040.88Tryptophan synthase alpha chain OS=Chromobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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