FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALSV (Tryptophan synthase alpha chain OS=Salmonella schwarzengrund (strain CVM19633) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPB (Tryptophan synthase alpha chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALNS (Tryptophan synthase alpha chain OS=Salmonella newport (strain SL254) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALHS (Tryptophan synthase alpha chain OS=Salmonella heidelberg (strain SL476) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALG2 (Tryptophan synthase alpha chain OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALEP (Tryptophan synthase alpha chain OS=Salmonella enteritidis PT4 (strain P125109) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALDC (Tryptophan synthase alpha chain OS=Salmonella dublin (strain CT_02021853) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALA4 (Tryptophan synthase alpha chain OS=Salmonella agona (strain SL483) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_ERWT9 (Tryptophan synthase alpha chain OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 48/141 (34.04%), Postives = 81/141 (57.45%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F RL ++ + A +P++T GD + + + L + G+D +ELG+P+SDPLADGP IQ A R+ A G ML + + PI L Y N + G+D+F + + +G+ ++V DVP+EE+ ++ AM++ + Sbjct: 8 FKRLAEKQEGAFVPFVTLGDPTPELSLQIIDALVAGGADALELGIPFSDPLADGPTIQNANLRAFAAGVTPEHCFDMLAAIRQKYPDMPIGLLMYANLVFSNGIDSFYARCQQVGVDSVLVADVPVEESAPFRQAAMRHNV 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHRVO (Tryptophan synthase alpha chain OS=Chromobacterium violaceum GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ 621 +A F L GK ALIP+ITAGD T + L G+DIIELGVP+SDP+ADGPVIQ A+ R+L +L M+ E + P+ L Y NP+ G F S + G+ G++ D P EE L+ Sbjct: 4 IANCFAELA--GKKALIPFITAGDPHPGLTVSLMHGLVDGGADIIELGVPFSDPMADGPVIQRASERALKHKVGLRHVLEMVAEFRRDNATTPVVLMGYLNPLCAMGYTEFASRAKAAGVDGVLTVDCPPEEAAELE 138 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |