FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCAT (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            ETF RL    +   IP++  GD  L T+ + ++ L   G+D +E+G+P+SDPLADGP +Q +  R+L++   F     +LK++       PI +  Y N +  +G+DNF     + G+  +++ DVP+EE++     A K KI
Sbjct:    6 ETFKRLSCLKEGCFIPFVVLGDPSLETSIKIIETLIKSGADALEIGIPFSDPLADGPTVQKSNLRALSKNNTFFEYFKILKQLRKKNKKLPIGILIYANLVYNQGIDNFYFQCFNSGLDSVLIADVPIEESKIFYNIANKYKI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCAI (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            ETF RL    +   IP++  GD  L T+ + ++ L   G+D +E+G+P+SDPLADGP +Q +  R+L++   F     +LK++       PI +  Y N +  +G+DNF     + G+  +++ DVP+EE++     A K KI
Sbjct:    6 ETFKRLSCLKEGCFIPFVVLGDPSLETSIKIIETLIKSGADALEIGIPFSDPLADGPTVQKSNLRALSKNNTFFEYFKILKQLRKKNKKLPIGILIYANLVYNQGIDNFYFQCFNSGLDSVLIADVPIEESKIFYNIANKYKI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCA5 (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=trpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            ETF RL    +   IP++  GD  L T+ + ++ L   G+D +E+G+P+SDPLADGP +Q +  R+L++   F     +LK++       PI +  Y N +  +G+DNF     + G+  +++ DVP+EE++     A K KI
Sbjct:    6 ETFKRLSCLKEGCFIPFVVLGDPSLETSIKIIETLIKSGADALEIGIPFSDPLADGPTVQKSNLRALSKNNTFFEYFKILKQLRKKNKKLPIGILIYANLVYNQGIDNFYFQCFNSGLDSVLIADVPIEESKIFYNIANKYKI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SHIBS (Tryptophan synthase alpha chain OS=Shigella boydii serotype 4 (strain Sb227) GN=trpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 47/143 (32.87%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +LK++ + A +P++T  D  +  + + +  L   G+D +ELG+P+SDPLADGP IQ A  R+ A G        +L+++++  P I  PI L  Y N +  +G+D F +    +G+  ++V DVP+EE+   ++ A+++ +
Sbjct:    8 FAQLKERKEGAFVPFVTLRDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTI--PIGLLMYANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNV 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPC (Tryptophan synthase alpha chain OS=Salmonella paratyphi C (strain RKS4594) GN=trpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDSGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALCH (Tryptophan synthase alpha chain OS=Salmonella choleraesuis GN=trpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G+D +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDSGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_LEGPC (Tryptophan synthase alpha chain OS=Legionella pneumophila (strain Corby) GN=trpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKN 639
            +T  +LK   K  L PYITAGD     T   +  L   G+D++ELG+P+SDP+A+GPVIQ A  R+LA   + + +L+M+++        P+ L  Y NPI + G D F     + G+ G ++ D+P EE + + +   K+
Sbjct:    6 KTLEKLKANRKKMLSPYITAGDPYPELTVSLMHQLVKSGADVLELGIPFSDPMAEGPVIQRAMERALAHSIHCDDVLNMVRQFRKTDNETPVILMGYLNPIEQYGYDLFAQQAVEAGVDGTILVDLPPEEADGVSRVWQKH 146          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_FRATM (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=trpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 636
            F  L+K+ + A IP++T GD + + + E L  L S G+D +ELG+P+SDPLADGP IQ A  R+L  G    +   IL+ ++   P I  PI L  Y N +   G++NF     D G+  +++ DVP  E++  +  A K
Sbjct:    9 FANLEKRNEGAFIPFVTIGDPNKALSFEILDTLVSSGADALELGIPFSDPLADGPTIQEANIRALESGITPKDCFDILTKIRAKYPHI--PIGLLLYANLVYANGIENFYQKCLDAGVDSILIADVPAHESKEFRDIAKK 146          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCDN (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Diuraphis noxia GN=trpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F RL ++ +   +P++  GD  L T+ + + +L   G+D +ELG+P+SDPLADG  IQ A  R+L++  N       +K +       PI L  Y N +  +G+DNF    R  G+  +++ DVP+EE+E     A K KI  +
Sbjct:    8 FDRLSQRKEGCFVPFVVLGDPSLDTSLKIINILIQNGADALELGIPFSDPLADGKTIQKANLRALSQKNNIFQYFKEIKNLRKKHTQIPIGLLIYANLVYNQGLDNFYLKCRKSGVDSVLIADVPIEESEIFYTTANKYKISSI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METTM (Tryptophan synthase alpha chain OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=trpA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  217 AETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            AE F+R++     A +P++ AGD D+ T+ E ++ L   G+D +E+G P+SDP+ADG  +Q A  R+L  G   +    +++ +    S P+ L  YYN I + G D F     + G+ G++  D+P EE     + A +  I+ +
Sbjct:    4 AEMFSRVEG---CAFVPFVVAGDPDMETSVEIIRTLVDAGADALEIGFPFSDPIADGTSVQEADLRALNSGMTTDDCFRLIERIREFTSVPVGLLVYYNLIYRMGADEFYRRAAEAGVTGILAADLPPEEAGDALRAAERYGIDQI 146          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_BUCAT8.959e-2034.27Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_BUCAI8.959e-2034.27Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_BUCA58.959e-2034.27Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_SHIBS1.170e-1932.87Tryptophan synthase alpha chain OS=Shigella boydii... [more]
TRPA_SALPC1.170e-1934.97Tryptophan synthase alpha chain OS=Salmonella para... [more]
TRPA_SALCH1.170e-1934.97Tryptophan synthase alpha chain OS=Salmonella chol... [more]
TRPA_LEGPC1.170e-1936.17Tryptophan synthase alpha chain OS=Legionella pneu... [more]
TRPA_FRATM1.170e-1937.86Tryptophan synthase alpha chain OS=Francisella tul... [more]
TRPA_BUCDN1.170e-1934.72Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_METTM1.528e-1932.19Tryptophan synthase alpha chain OS=Methanobacteriu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
back to top