FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCAT (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 ETF RL + IP++ GD L T+ + ++ L G+D +E+G+P+SDPLADGP +Q + R+L++ F +LK++ PI + Y N + +G+DNF + G+ +++ DVP+EE++ A K KI Sbjct: 6 ETFKRLSCLKEGCFIPFVVLGDPSLETSIKIIETLIKSGADALEIGIPFSDPLADGPTVQKSNLRALSKNNTFFEYFKILKQLRKKNKKLPIGILIYANLVYNQGIDNFYFQCFNSGLDSVLIADVPIEESKIFYNIANKYKI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCAI (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 ETF RL + IP++ GD L T+ + ++ L G+D +E+G+P+SDPLADGP +Q + R+L++ F +LK++ PI + Y N + +G+DNF + G+ +++ DVP+EE++ A K KI Sbjct: 6 ETFKRLSCLKEGCFIPFVVLGDPSLETSIKIIETLIKSGADALEIGIPFSDPLADGPTVQKSNLRALSKNNTFFEYFKILKQLRKKNKKLPIGILIYANLVYNQGIDNFYFQCFNSGLDSVLIADVPIEESKIFYNIANKYKI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCA5 (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=trpA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 ETF RL + IP++ GD L T+ + ++ L G+D +E+G+P+SDPLADGP +Q + R+L++ F +LK++ PI + Y N + +G+DNF + G+ +++ DVP+EE++ A K KI Sbjct: 6 ETFKRLSCLKEGCFIPFVVLGDPSLETSIKIIETLIKSGADALEIGIPFSDPLADGPTVQKSNLRALSKNNTFFEYFKILKQLRKKNKKLPIGILIYANLVYNQGIDNFYFQCFNSGLDSVLIADVPIEESKIFYNIANKYKI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SHIBS (Tryptophan synthase alpha chain OS=Shigella boydii serotype 4 (strain Sb227) GN=trpA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19 Identity = 47/143 (32.87%), Postives = 85/143 (59.44%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +LK++ + A +P++T D + + + + L G+D +ELG+P+SDPLADGP IQ A R+ A G +L+++++ P I PI L Y N + +G+D F + +G+ ++V DVP+EE+ ++ A+++ + Sbjct: 8 FAQLKERKEGAFVPFVTLRDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTI--PIGLLMYANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNV 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPC (Tryptophan synthase alpha chain OS=Salmonella paratyphi C (strain RKS4594) GN=trpA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDSGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALCH (Tryptophan synthase alpha chain OS=Salmonella choleraesuis GN=trpA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19 Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G+D +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDSGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_LEGPC (Tryptophan synthase alpha chain OS=Legionella pneumophila (strain Corby) GN=trpA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19 Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKN 639 +T +LK K L PYITAGD T + L G+D++ELG+P+SDP+A+GPVIQ A R+LA + + +L+M+++ P+ L Y NPI + G D F + G+ G ++ D+P EE + + + K+ Sbjct: 6 KTLEKLKANRKKMLSPYITAGDPYPELTVSLMHQLVKSGADVLELGIPFSDPMAEGPVIQRAMERALAHSIHCDDVLNMVRQFRKTDNETPVILMGYLNPIEQYGYDLFAQQAVEAGVDGTILVDLPPEEADGVSRVWQKH 146
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_FRATM (Tryptophan synthase alpha chain OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=trpA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19 Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMK 636 F L+K+ + A IP++T GD + + + E L L S G+D +ELG+P+SDPLADGP IQ A R+L G + IL+ ++ P I PI L Y N + G++NF D G+ +++ DVP E++ + A K Sbjct: 9 FANLEKRNEGAFIPFVTIGDPNKALSFEILDTLVSSGADALELGIPFSDPLADGPTIQEANIRALESGITPKDCFDILTKIRAKYPHI--PIGLLLYANLVYANGIENFYQKCLDAGVDSILIADVPAHESKEFRDIAKK 146
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCDN (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Diuraphis noxia GN=trpA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19 Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 F RL ++ + +P++ GD L T+ + + +L G+D +ELG+P+SDPLADG IQ A R+L++ N +K + PI L Y N + +G+DNF R G+ +++ DVP+EE+E A K KI + Sbjct: 8 FDRLSQRKEGCFVPFVVLGDPSLDTSLKIINILIQNGADALELGIPFSDPLADGKTIQKANLRALSQKNNIFQYFKEIKNLRKKHTQIPIGLLIYANLVYNQGLDNFYLKCRKSGVDSVLIADVPIEESEIFYTTANKYKISSI 151
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METTM (Tryptophan synthase alpha chain OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=trpA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19 Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 217 AETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 AE F+R++ A +P++ AGD D+ T+ E ++ L G+D +E+G P+SDP+ADG +Q A R+L G + +++ + S P+ L YYN I + G D F + G+ G++ D+P EE + A + I+ + Sbjct: 4 AEMFSRVEG---CAFVPFVVAGDPDMETSVEIIRTLVDAGADALEIGFPFSDPIADGTSVQEADLRALNSGMTTDDCFRLIERIREFTSVPVGLLVYYNLIYRMGADEFYRRAAEAGVTGILAADLPPEEAGDALRAAERYGIDQI 146 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |