FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:1..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSL (Tryptophan synthase alpha chain OS=Geobacter sulfurreducens GN=trpA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            +A TF  LK   + AL+ +ITAGD DL+ T   + LL   G+DI+ELGVP+SDP+ADGP IQ ++ R+LA GT    IL M++ V  +   PI L  YYNPIL  G++ F +     G+ G+++ D+P EE    +  A ++ ++++
Sbjct:    4 IAGTFAELKHNSRKALVTFITAGDPDLAATEALIPLLAESGADIVELGVPFSDPMADGPTIQLSSERALAAGTTLPKILDMVRRVRTRCQVPIVLMGYYNPILIHGLERFAADASAAGVDGVLLVDLPPEEAAEFKACADRHGLDVI 150          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CARHZ (Tryptophan synthase alpha chain OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=trpA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.167e-27
Identity = 57/147 (38.78%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            + + F   + +G+ ALI Y   GD +L+ + E +K L + G+D+IE+G+P+SDPLADGPVIQ A  R+LA G+    +L+++     ++S P+ + +Y NPIL+ GVD F+      G  GL++PD+P+EE E ++  A    ++L+
Sbjct:    4 IGQVFAEKRSRGEKALIAYTMGGDPNLTFSLEIIKTLAAAGADLIEVGLPFSDPLADGPVIQRAGQRALAAGSGPEEVLALIAAARQELSLPLVIMSYLNPILQIGVDEFLRRAAGAGADGLIIPDLPVEEGEEIRVSAAGYGLDLI 150          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_OLICO (Tryptophan synthase alpha chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.991e-27
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            T  L   F  LKK+G+ AL+ ++  GD DL T+   +K L   G+D+IE+G+P++DP+ADGP IQAA  R+L  GT     L +++     + + P+ L  YYNPI   GVD F+   ++ G+ GL+V D+P EE E L   A+K  +  +
Sbjct:    2 TTRLDTRFADLKKEGRAALVTFLMCGDPDLETSLAIMKALPKAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLDVVRNFRKGEAATPVVLMGYYNPIFIYGVDRFLVDAKEAGVDGLIVVDLPPEEDEELCLPALKAGVNFI 152          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METAC (Tryptophan synthase alpha chain OS=Methanosarcina acetivorans GN=trpA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.991e-27
Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            ++E F  LK++ + ALI Y+ AGD     T   +K L + G+DIIELG P+SDP+ADGP IQAA  R+LA G +      +++ +   +  P+   TYYNP+ + GVD F+    D GI GL++PD+P+EE   L+    K  ++L+
Sbjct:   15 ISEKFDELKQKKEGALIGYVMAGDPSAEATFGIVKALVNGGADIIELGFPFSDPVADGPTIQAAGQRALAAGMDIEHYFELVRGL--GVEVPLVCMTYYNPVFRYGVDKFVEHAADAGISGLIIPDIPVEEAADLKSSCEKYGLDLI 159          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSF (Tryptophan synthase alpha chain OS=Geobacter sp. (strain FRC-32) GN=trpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 1
Query:  223 TFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            TF +L K  K AL+ +ITAGD DL TT   +  L+  G+D+IELGVP+SDP+ADGP IQ ++ R+LA GT    IL+ +K V  +   PI L  YYNPI   GV+ F+S     G+ G+++ D+P EE    +  A ++ + ++
Sbjct:    7 TFAKLAKNKKKALVTFITAGDPDLETTESLIIDLEKAGADLIELGVPFSDPMADGPTIQLSSERALAAGTTLPKILATVKSVRRKTQIPIILMGYYNPIFLHGVERFVSDAVAAGVDGVLLVDLPPEEAGEFKAIADRSGLAVI 150          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_JANSC (Tryptophan synthase alpha chain OS=Jannaschia sp. (strain CCS1) GN=trpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            +TF RL   GK A + YI AGD D +T+ E ++ L + G DIIELG+P++DP+ADG  IQ A  R+L  G   +  L M+++      + PI L  YYNPI  RGVD F++  R+ GI GL+V D+P EE E L
Sbjct:    6 DTFARLSASGKKAFVSYIMAGDPDYATSLEVMRGLPAAGVDIIELGLPFTDPMADGSTIQLAGQRALDGGMTLDKTLQMVRDFRAGDDTTPIVLMGYYNPIYSRGVDRFLTDAREAGIDGLIVVDLPPEEDEEL 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHLSY (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27
Identity = 55/150 (36.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 660
            +AETF RL+  G++AL+PY+T G  + ++T E +  L++ G+ + ELG+P+SDPLADG  IQ A  R+L  G      ++ + E+   +++ P+ L  YYNP+L+ G++   + +   G  G ++PD+PLEE + L++ A  ++++L++F
Sbjct:    4 IAETFARLRAAGRIALMPYLTVGFPERTSTLELVPALEAAGASLFELGIPFSDPLADGTTIQRATQRALENGITIADCIATVAELRARRVAAPLLLMGYYNPLLRYGLERACAALAAAGGDGWIIPDLPLEEADDLRQLAAAHQLDLIMF 153          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAA (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27
Identity = 55/150 (36.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 660
            +AETF RL+  G++AL+PY+T G  + ++T E +  L++ G+ + ELG+P+SDPLADG  IQ A  R+L  G      ++ + E+   +++ P+ L  YYNP+L+ G++   + +   G  G ++PD+PLEE + L++ A  ++++L++F
Sbjct:    4 IAETFARLRAAGRIALMPYLTVGFPERTSTLELVPALEAAGASLFELGIPFSDPLADGTTIQRATQRALENGITIADCIATVAELRARRVAAPLLLMGYYNPLLRYGLERACAALAAAGGDGWIIPDLPLEEADDLRQLAAAHQLDLIMF 153          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPS (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27
Identity = 60/151 (39.74%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            T  +   F  LKKQG+ A + ++ AGD DL+T+ + LK L + G+DIIE+G+P++DP+ADGP IQAA  R+L  G   +  L ++++      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE   L   AMK  +  +
Sbjct:    2 TTRIDTRFAELKKQGRSAFVTFVMAGDPDLATSLQVLKALPAAGADIIEIGMPFTDPMADGPAIQAAGLRALHSGATLSHTLGLVRDFRKDDDTTPMVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDSELCLPAMKAGLNFI 152          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PELPD (Tryptophan synthase alpha chain OS=Pelobacter propionicus (strain DSM 2379) GN=trpA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIEL 651
            L   F  LK++   AL+ +ITAGD DL+TT   + LL   G+DIIELG+P+SDP+ADGP IQ ++ R+LA  T    IL+M++ V      PI L  Y NPI   G + F +   + G+ G++V D+P EE ES    A    +++
Sbjct:    4 LTHCFNELKQRNTKALVTFITAGDPDLATTQAMIPLLQQAGADIIELGMPFSDPMADGPTIQLSSERALAASTTLERILAMVRAVRRSCQVPIVLMGYLNPIHAYGYERFANDAAEAGVDGVLVVDMPPEEAESFLNHANARDLQV 149          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_GEOSL6.844e-2841.50Tryptophan synthase alpha chain OS=Geobacter sulfu... [more]
TRPA_CARHZ1.167e-2738.78Tryptophan synthase alpha chain OS=Carboxydothermu... [more]
TRPA_OLICO1.991e-2739.74Tryptophan synthase alpha chain OS=Oligotropha car... [more]
TRPA_METAC1.991e-2740.82Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_GEOSF3.396e-2743.06Tryptophan synthase alpha chain OS=Geobacter sp. (... [more]
TRPA_JANSC4.436e-2746.27Tryptophan synthase alpha chain OS=Jannaschia sp. ... [more]
TRPA_CHLSY5.794e-2736.67Tryptophan synthase alpha chain OS=Chloroflexus au... [more]
TRPA_CHLAA5.794e-2736.67Tryptophan synthase alpha chain OS=Chloroflexus au... [more]
TRPA_RHOPS7.567e-2739.74Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_PELPD7.567e-2741.78Tryptophan synthase alpha chain OS=Pelobacter prop... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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