FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSL (Tryptophan synthase alpha chain OS=Geobacter sulfurreducens GN=trpA PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 +A TF LK + AL+ +ITAGD DL+ T + LL G+DI+ELGVP+SDP+ADGP IQ ++ R+LA GT IL M++ V + PI L YYNPIL G++ F + G+ G+++ D+P EE + A ++ ++++ Sbjct: 4 IAGTFAELKHNSRKALVTFITAGDPDLAATEALIPLLAESGADIVELGVPFSDPMADGPTIQLSSERALAAGTTLPKILDMVRRVRTRCQVPIVLMGYYNPILIHGLERFAADASAAGVDGVLLVDLPPEEAAEFKACADRHGLDVI 150
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CARHZ (Tryptophan synthase alpha chain OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=trpA PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.167e-27 Identity = 57/147 (38.78%), Postives = 94/147 (63.95%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 + + F + +G+ ALI Y GD +L+ + E +K L + G+D+IE+G+P+SDPLADGPVIQ A R+LA G+ +L+++ ++S P+ + +Y NPIL+ GVD F+ G GL++PD+P+EE E ++ A ++L+ Sbjct: 4 IGQVFAEKRSRGEKALIAYTMGGDPNLTFSLEIIKTLAAAGADLIEVGLPFSDPLADGPVIQRAGQRALAAGSGPEEVLALIAAARQELSLPLVIMSYLNPILQIGVDEFLRRAAGAGADGLIIPDLPVEEGEEIRVSAAGYGLDLI 150
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_OLICO (Tryptophan synthase alpha chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpA PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.991e-27 Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 T L F LKK+G+ AL+ ++ GD DL T+ +K L G+D+IE+G+P++DP+ADGP IQAA R+L GT L +++ + + P+ L YYNPI GVD F+ ++ G+ GL+V D+P EE E L A+K + + Sbjct: 2 TTRLDTRFADLKKEGRAALVTFLMCGDPDLETSLAIMKALPKAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLDVVRNFRKGEAATPVVLMGYYNPIFIYGVDRFLVDAKEAGVDGLIVVDLPPEEDEELCLPALKAGVNFI 152
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METAC (Tryptophan synthase alpha chain OS=Methanosarcina acetivorans GN=trpA PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.991e-27 Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 ++E F LK++ + ALI Y+ AGD T +K L + G+DIIELG P+SDP+ADGP IQAA R+LA G + +++ + + P+ TYYNP+ + GVD F+ D GI GL++PD+P+EE L+ K ++L+ Sbjct: 15 ISEKFDELKQKKEGALIGYVMAGDPSAEATFGIVKALVNGGADIIELGFPFSDPVADGPTIQAAGQRALAAGMDIEHYFELVRGL--GVEVPLVCMTYYNPVFRYGVDKFVEHAADAGISGLIIPDIPVEEAADLKSSCEKYGLDLI 159
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSF (Tryptophan synthase alpha chain OS=Geobacter sp. (strain FRC-32) GN=trpA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27 Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 1 Query: 223 TFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 TF +L K K AL+ +ITAGD DL TT + L+ G+D+IELGVP+SDP+ADGP IQ ++ R+LA GT IL+ +K V + PI L YYNPI GV+ F+S G+ G+++ D+P EE + A ++ + ++ Sbjct: 7 TFAKLAKNKKKALVTFITAGDPDLETTESLIIDLEKAGADLIELGVPFSDPMADGPTIQLSSERALAAGTTLPKILATVKSVRRKTQIPIILMGYYNPIFLHGVERFVSDAVAAGVDGVLLVDLPPEEAGEFKAIADRSGLAVI 150
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_JANSC (Tryptophan synthase alpha chain OS=Jannaschia sp. (strain CCS1) GN=trpA PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27 Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618 +TF RL GK A + YI AGD D +T+ E ++ L + G DIIELG+P++DP+ADG IQ A R+L G + L M+++ + PI L YYNPI RGVD F++ R+ GI GL+V D+P EE E L Sbjct: 6 DTFARLSASGKKAFVSYIMAGDPDYATSLEVMRGLPAAGVDIIELGLPFTDPMADGSTIQLAGQRALDGGMTLDKTLQMVRDFRAGDDTTPIVLMGYYNPIYSRGVDRFLTDAREAGIDGLIVVDLPPEEDEEL 139
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHLSY (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27 Identity = 55/150 (36.67%), Postives = 98/150 (65.33%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 660 +AETF RL+ G++AL+PY+T G + ++T E + L++ G+ + ELG+P+SDPLADG IQ A R+L G ++ + E+ +++ P+ L YYNP+L+ G++ + + G G ++PD+PLEE + L++ A ++++L++F Sbjct: 4 IAETFARLRAAGRIALMPYLTVGFPERTSTLELVPALEAAGASLFELGIPFSDPLADGTTIQRATQRALENGITIADCIATVAELRARRVAAPLLLMGYYNPLLRYGLERACAALAAAGGDGWIIPDLPLEEADDLRQLAAAHQLDLIMF 153
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAA (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27 Identity = 55/150 (36.67%), Postives = 98/150 (65.33%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 660 +AETF RL+ G++AL+PY+T G + ++T E + L++ G+ + ELG+P+SDPLADG IQ A R+L G ++ + E+ +++ P+ L YYNP+L+ G++ + + G G ++PD+PLEE + L++ A ++++L++F Sbjct: 4 IAETFARLRAAGRIALMPYLTVGFPERTSTLELVPALEAAGASLFELGIPFSDPLADGTTIQRATQRALENGITIADCIATVAELRARRVAAPLLLMGYYNPLLRYGLERACAALAAAGGDGWIIPDLPLEEADDLRQLAAAHQLDLIMF 153
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPS (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27 Identity = 60/151 (39.74%), Postives = 92/151 (60.93%), Query Frame = 1 Query: 205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 T + F LKKQG+ A + ++ AGD DL+T+ + LK L + G+DIIE+G+P++DP+ADGP IQAA R+L G + L ++++ + P+ L YYNPI GVD F++ + G+ GL++ D+P EE L AMK + + Sbjct: 2 TTRIDTRFAELKKQGRSAFVTFVMAGDPDLATSLQVLKALPAAGADIIEIGMPFTDPMADGPAIQAAGLRALHSGATLSHTLGLVRDFRKDDDTTPMVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDSELCLPAMKAGLNFI 152
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PELPD (Tryptophan synthase alpha chain OS=Pelobacter propionicus (strain DSM 2379) GN=trpA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27 Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIEL 651 L F LK++ AL+ +ITAGD DL+TT + LL G+DIIELG+P+SDP+ADGP IQ ++ R+LA T IL+M++ V PI L Y NPI G + F + + G+ G++V D+P EE ES A +++ Sbjct: 4 LTHCFNELKQRNTKALVTFITAGDPDLATTQAMIPLLQQAGADIIELGMPFSDPMADGPTIQLSSERALAASTTLERILAMVRAVRRSCQVPIVLMGYLNPIHAYGYERFANDAAEAGVDGVLVVDMPPEEAESFLNHANARDLQV 149 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |