FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VIBF1 (Tryptophan synthase alpha chain OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=trpA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19 Identity = 45/141 (31.91%), Postives = 82/141 (58.16%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L+K+ + A +P++T GD + + + ++ L G+D +ELG+P+SDPLADGP IQ A R+L T ++ ++ + PI L Y N + G+DNF + + G+ +++ DVP E++ ++ A+++ I Sbjct: 8 FAQLEKKNQGAFVPFVTIGDPNPELSYDIMETLIEAGADALELGIPFSDPLADGPTIQGANIRALDSKTTPAICFELITKIRSKYPDTPIGLLVYANLVFANGIDNFYTKCQQAGVDSVLIADVPTNESQEFRESAIEHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPK (Tryptophan synthase alpha chain OS=Salmonella paratyphi A (strain AKU_12601) GN=trpA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19 Identity = 49/143 (34.27%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G++ +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGANALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPA (Tryptophan synthase alpha chain OS=Salmonella paratyphi A GN=trpA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19 Identity = 49/143 (34.27%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L + + A +P++T GD + + + + L G++ +ELGVP+SDPLADGP IQ A R+ A G +L++++E P I PI L Y N + G+D F + +G+ ++V DVP+EE+ ++ A+++ I Sbjct: 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGANALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PELPB (Tryptophan synthase alpha chain OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=trpA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19 Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 229 TRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK-----EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEA 630 T+L KQ K LI Y +T L+ L+ G DIIELG+PYSDP+ DGPVIQ AA ++ G +L +++ E +I+ PI L Y NP++ G D F+ + G+ GL++PD+P EE ++A Sbjct: 7 TQLVKQDKKFLIAYYMPEFPVTGSTLPVLEALEESGVDIIELGMPYSDPIGDGPVIQDAAHTAIRNGVTIKYLLELVRRARQGEGCKKITAPILLMGYCNPLIAYGGDCFLHDALEAGVDGLLIPDLPPEEAADFLEKA 145
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_HALVO (Tryptophan synthase alpha chain OS=Halobacterium volcanii GN=trpA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19 Identity = 49/137 (35.77%), Postives = 80/137 (58.39%), Query Frame = 1 Query: 256 ALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVD----NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 A +PY+ AGD D ++ E ++ L+ G+D+IELG+P+S+P+A+GP IQ A RSL G ++++ +S P+ YYN I + G + F+ ++GI G VVPD+P EE L++ + ++LV Sbjct: 12 AFVPYLAAGDPDYESSLEYVEALERGGADVIELGLPFSEPIAEGPTIQNAVVRSLEGGMTPTRFFEFVEDL--DVSVPLVCMRYYNLIYRYGDEPGPRPFVEKAAEVGIEGFVVPDLPAEEAGPLREACDEFGLDLV 146
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SULMW (Tryptophan synthase alpha chain OS=Sulcia muelleri (strain GWSS) GN=trpA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1 Query: 268 YITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP 597 Y TAG + + LK L + DI+E+G+PYSDPLADG +IQ + T+SL G N + + LK+V I+ PI L YYN +K G F+ + G+ GL++PD+P Sbjct: 19 YFTAGYPSIDSMPLILKRLQNLNIDIVEIGIPYSDPLADGNIIQKSNTKSLKNGMNISVLFYKLKKVKKYINIPIILMGYYNQFIKYGEIKFLEDCIESGVSGLILPDLP 128
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SHEAM (Tryptophan synthase alpha chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=trpA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19 Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 217 AETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609 + F RLK + A +P++T GD + + + L G+D +ELG P+SDPLADGPVIQ A R+LA GT + M++++ + PI L Y N + G++ F + G+ +++ DVP EE+ Sbjct: 5 SNAFARLKAGSRGAFVPFVTLGDPGIDESLAIIDALVEGGADCLELGFPFSDPLADGPVIQGANIRALAAGTTPDTCFKMIEQIRAKYPELPIGLLLYANLVFANGIEAFYQRAKAAGVDSVLIADVPAEES 136
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALRD (Tryptophan synthase alpha chain OS=Salinibacter ruber (strain DSM 13855) GN=trpA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19 Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 L ETF L K A+ ++T G + T L +D G+D IELG+P+SDPLA+G IQ A+ R+L+ G L ++ P+ L Y NP+ K GVD F + G+ GL++PD+P +E+++L A + +ELV Sbjct: 4 LDETFDALGPDEK-AMGLFLTDGFPNPDATVPLLHAIDRGGADFIELGMPFSDPLAEGRPIQRASARALSHGVTLPDTLRTVEAFREDSDTPLLLMGYVNPVFKYGVDAFCRDAAEAGVDGLILPDLPPQESDALCDAAAAHGLELV 149
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PECCP (Tryptophan synthase alpha chain OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=trpA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19 Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML---KEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 + F RL ++ + A +P++T GD + + + L + G+D +ELGVP+SDPLADGP IQ A R+ A G ML ++ P I PI L Y N + G+D F +G+ ++V DVP+ E+ + A+++ I Sbjct: 6 QLFNRLSEKKEGAFVPFVTLGDPSPEQSLKIIDTLIAAGADALELGVPFSDPLADGPTIQDANLRAFAAGVTPGQCFEMLATIRQKYPDI--PIGLLMYANLVFSNGIDEFYQRCAQVGVDSVLVADVPVAESAPFRTAALRHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_THEMA (Tryptophan synthase alpha chain OS=Thermotoga maritima GN=trpA PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19 Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 262 IPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILK--RGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618 I YI AG DL TT + L L+ G +E+GVP+SDP+ADGPVIQ A + +L G IL ML E+ + + L +Y NPI+ G + + ++ +G++GL++PD+PL E +++ Sbjct: 5 IAYIPAGFPDLETTRKILIALNELGITGVEIGVPFSDPVADGPVIQLAHSVALRNGVTIKKILEMLSEI--SVDYDLYLMSYLNPIVNYPEGKEKLLDELKKLGVKGLIIPDLPLREVKNV 123 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |