FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VIBF1 (Tryptophan synthase alpha chain OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=trpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 45/141 (31.91%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L+K+ + A +P++T GD +   + + ++ L   G+D +ELG+P+SDPLADGP IQ A  R+L   T       ++ ++  +    PI L  Y N +   G+DNF +  +  G+  +++ DVP  E++  ++ A+++ I
Sbjct:    8 FAQLEKKNQGAFVPFVTIGDPNPELSYDIMETLIEAGADALELGIPFSDPLADGPTIQGANIRALDSKTTPAICFELITKIRSKYPDTPIGLLVYANLVFANGIDNFYTKCQQAGVDSVLIADVPTNESQEFRESAIEHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPK (Tryptophan synthase alpha chain OS=Salmonella paratyphi A (strain AKU_12601) GN=trpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 49/143 (34.27%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G++ +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGANALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALPA (Tryptophan synthase alpha chain OS=Salmonella paratyphi A GN=trpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 49/143 (34.27%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L  + + A +P++T GD  +  + + +  L   G++ +ELGVP+SDPLADGP IQ A  R+ A G        +L++++E  P I  PI L  Y N +   G+D F +    +G+  ++V DVP+EE+   ++ A+++ I
Sbjct:    8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGANALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTI--PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PELPB (Tryptophan synthase alpha chain OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  229 TRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK-----EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEA 630
            T+L KQ K  LI Y         +T   L+ L+  G DIIELG+PYSDP+ DGPVIQ AA  ++  G     +L +++     E   +I+ PI L  Y NP++  G D F+    + G+ GL++PD+P EE     ++A
Sbjct:    7 TQLVKQDKKFLIAYYMPEFPVTGSTLPVLEALEESGVDIIELGMPYSDPIGDGPVIQDAAHTAIRNGVTIKYLLELVRRARQGEGCKKITAPILLMGYCNPLIAYGGDCFLHDALEAGVDGLLIPDLPPEEAADFLEKA 145          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_HALVO (Tryptophan synthase alpha chain OS=Halobacterium volcanii GN=trpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 49/137 (35.77%), Postives = 80/137 (58.39%), Query Frame = 1
Query:  256 ALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVD----NFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            A +PY+ AGD D  ++ E ++ L+  G+D+IELG+P+S+P+A+GP IQ A  RSL  G         ++++   +S P+    YYN I + G +     F+    ++GI G VVPD+P EE   L++   +  ++LV
Sbjct:   12 AFVPYLAAGDPDYESSLEYVEALERGGADVIELGLPFSEPIAEGPTIQNAVVRSLEGGMTPTRFFEFVEDL--DVSVPLVCMRYYNLIYRYGDEPGPRPFVEKAAEVGIEGFVVPDLPAEEAGPLREACDEFGLDLV 146          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SULMW (Tryptophan synthase alpha chain OS=Sulcia muelleri (strain GWSS) GN=trpA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  268 YITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVP 597
            Y TAG   + +    LK L +   DI+E+G+PYSDPLADG +IQ + T+SL  G N + +   LK+V   I+ PI L  YYN  +K G   F+    + G+ GL++PD+P
Sbjct:   19 YFTAGYPSIDSMPLILKRLQNLNIDIVEIGIPYSDPLADGNIIQKSNTKSLKNGMNISVLFYKLKKVKKYINIPIILMGYYNQFIKYGEIKFLEDCIESGVSGLILPDLP 128          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SHEAM (Tryptophan synthase alpha chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=trpA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  217 AETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  F RLK   + A +P++T GD  +  +   +  L   G+D +ELG P+SDPLADGPVIQ A  R+LA GT  +    M++++  +    PI L  Y N +   G++ F    +  G+  +++ DVP EE+
Sbjct:    5 SNAFARLKAGSRGAFVPFVTLGDPGIDESLAIIDALVEGGADCLELGFPFSDPLADGPVIQGANIRALAAGTTPDTCFKMIEQIRAKYPELPIGLLLYANLVFANGIEAFYQRAKAAGVDSVLIADVPAEES 136          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SALRD (Tryptophan synthase alpha chain OS=Salinibacter ruber (strain DSM 13855) GN=trpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L ETF  L    K A+  ++T G  +   T   L  +D  G+D IELG+P+SDPLA+G  IQ A+ R+L+ G      L  ++        P+ L  Y NP+ K GVD F     + G+ GL++PD+P +E+++L   A  + +ELV
Sbjct:    4 LDETFDALGPDEK-AMGLFLTDGFPNPDATVPLLHAIDRGGADFIELGMPFSDPLAEGRPIQRASARALSHGVTLPDTLRTVEAFREDSDTPLLLMGYVNPVFKYGVDAFCRDAAEAGVDGLILPDLPPQESDALCDAAAAHGLELV 149          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PECCP (Tryptophan synthase alpha chain OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=trpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSML---KEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F RL ++ + A +P++T GD     + + +  L + G+D +ELGVP+SDPLADGP IQ A  R+ A G        ML   ++  P I  PI L  Y N +   G+D F      +G+  ++V DVP+ E+   +  A+++ I
Sbjct:    6 QLFNRLSEKKEGAFVPFVTLGDPSPEQSLKIIDTLIAAGADALELGVPFSDPLADGPTIQDANLRAFAAGVTPGQCFEMLATIRQKYPDI--PIGLLMYANLVFSNGIDEFYQRCAQVGVDSVLVADVPVAESAPFRTAALRHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_THEMA (Tryptophan synthase alpha chain OS=Thermotoga maritima GN=trpA PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  262 IPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILK--RGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            I YI AG  DL TT + L  L+  G   +E+GVP+SDP+ADGPVIQ A + +L  G     IL ML E+   +   + L +Y NPI+    G +  +  ++ +G++GL++PD+PL E +++
Sbjct:    5 IAYIPAGFPDLETTRKILIALNELGITGVEIGVPFSDPVADGPVIQLAHSVALRNGVTIKKILEMLSEI--SVDYDLYLMSYLNPIVNYPEGKEKLLDELKKLGVKGLIIPDLPLREVKNV 123          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_VIBF13.404e-1931.91Tryptophan synthase alpha chain OS=Vibrio fischeri... [more]
TRPA_SALPK3.404e-1934.27Tryptophan synthase alpha chain OS=Salmonella para... [more]
TRPA_SALPA3.404e-1934.27Tryptophan synthase alpha chain OS=Salmonella para... [more]
TRPA_PELPB3.404e-1938.13Tryptophan synthase alpha chain OS=Pelodictyon pha... [more]
TRPA_HALVO3.404e-1935.77Tryptophan synthase alpha chain OS=Halobacterium v... [more]
TRPA_SULMW4.446e-1941.82Tryptophan synthase alpha chain OS=Sulcia muelleri... [more]
TRPA_SHEAM4.446e-1935.61Tryptophan synthase alpha chain OS=Shewanella amaz... [more]
TRPA_SALRD5.807e-1936.73Tryptophan synthase alpha chain OS=Salinibacter ru... [more]
TRPA_PECCP5.807e-1934.48Tryptophan synthase alpha chain OS=Pectobacterium ... [more]
TRPA_THEMA7.584e-1939.67Tryptophan synthase alpha chain OS=Thermotoga mari... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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