FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_THEP1 (Tryptophan synthase alpha chain OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=trpA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18 Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 262 IPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILK--RGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618 I YI AG DL TT + L L+ G +E+GVP+SDP+ADGPVIQ A + +L G IL ML E+ + + L +Y NPI+ G + + ++ +G++GL++PD+PL E +++ Sbjct: 5 IAYIPAGFPDLETTRKILIALNELGITGVEIGVPFSDPVADGPVIQLAHSVALRNGVTMKKILEMLGEI--SVDYDLYLMSYLNPIVNYPEGKEKLLDELKKLGVKGLIIPDLPLREVKNV 123
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACTN (Tryptophan synthase alpha chain OS=Bacteroides thetaiotaomicron GN=trpA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18 Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 268 YITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606 Y AG+ L T ++ L+ G +IE+G+P+SDP+ADG VIQ AAT++L G + + L+ + ++S P+ Y NPI++ G +NF + GI G+++PD+P + Sbjct: 19 YFCAGNPTLDGTVNVIRTLEKHGVSMIEVGIPFSDPMADGIVIQNAATQALRNGMSLKILFEQLRNIRQEVSIPLVFMGYLNPIMQFGFENFCRKCVECGIDGVIIPDLPFRD 131
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERPY (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 + F +L + + A +P++ GD + + + L + G+D +ELG+P+SDPLADGP IQ AA R+ A G +L E+ + PI L Y N + G+D+F ++G+ +++ DVP EE+ + A+++ I Sbjct: 6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERPS (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 + F +L + + A +P++ GD + + + L + G+D +ELG+P+SDPLADGP IQ AA R+ A G +L E+ + PI L Y N + G+D+F ++G+ +++ DVP EE+ + A+++ I Sbjct: 6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERPB (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 + F +L + + A +P++ GD + + + L + G+D +ELG+P+SDPLADGP IQ AA R+ A G +L E+ + PI L Y N + G+D+F ++G+ +++ DVP EE+ + A+++ I Sbjct: 6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERP3 (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 + F +L + + A +P++ GD + + + L + G+D +ELG+P+SDPLADGP IQ AA R+ A G +L E+ + PI L Y N + G+D+F ++G+ +++ DVP EE+ + A+++ I Sbjct: 6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VIBFM (Tryptophan synthase alpha chain OS=Vibrio fischeri (strain MJ11) GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 44/141 (31.21%), Postives = 81/141 (57.45%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 F +L+K+ + A +P++T GD + + ++ L G+D +ELG+P+SDPLADGP IQ A R+L T ++ ++ + PI L Y N + G+D+F + + G+ +++ DVP E++ ++ A+++ I Sbjct: 8 FAQLEKKNQGAFVPFVTIGDPNPELSYNIMETLIEAGADALELGIPFSDPLADGPTIQGANIRALDSKTTPAICFELIAKIRSKYPETPIGLLVYANLVFANGIDDFYAKCQQAGVDSVLIADVPTNESQEFRESAIEHGI 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VESOH (Tryptophan synthase alpha chain OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQK 624 L+ F K KV IP+ITAGDS L T E +++L G+D+IELGVP+SDP+ADGPVI + R++ G + + + +++K+ + I L Y NPI G F + + G+ G++V D+P EE L++ Sbjct: 4 LSRVFFDSPKNHKV-FIPFITAGDSGLDNTFELMQVLVKNGADVIELGVPFSDPMADGPVISRSYERTVKDGVSLSDVFTVVKKFRQTNNTTAIVLMGYLNPIEVFGYQPFANAASESGVDGVLVVDMPPEEAYGLKQ 140
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SODGM (Tryptophan synthase alpha chain OS=Sodalis glossinidius (strain morsitans) GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 47/145 (32.41%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645 + F++L + + A +P++T GD + + + + L G+D +ELG+P+SDPLADGP IQ A R+ + G + +L+ +++ P I PI L Y N + G+D F + ++GI ++V DVPL+E+ ++ A+++ + Sbjct: 6 QLFSQLAARHEGAFVPFVTLGDPNPTLSLRIIDTLIDAGADALELGIPFSDPLADGPTIQNANLRAFSSGVTPAHCFEMLATIRQKYPAI--PIGLLMYANLVYNEGIDAFYAHCAEVGIDSVLVADVPLQESLPFRQAALRHNV 148
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PYRKO (Tryptophan synthase alpha chain OS=Pyrococcus kodakaraensis GN=trpA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1 Query: 250 KVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL----EETESLQKEAMK 636 K +LIPY+TAGD + T E L ++ +IELG+P+SDP+ADG IQ + R+L G + +L+E S P+ L TYYNP+ + GV F+ + G G++V D+P+ E ++ ++E +K Sbjct: 4 KGSLIPYLTAGDPSVEKTLEFLLAVEEFAG-LIELGIPFSDPMADGKTIQESHYRALRNGFKLDDTFRILREFRRHSSTPVILMTYYNPVFRTGVKKFLGEAKASGADGILVVDLPVSHAGEFLDAAKEEGLK 135 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |