FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_THEP1 (Tryptophan synthase alpha chain OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=trpA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  262 IPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILK--RGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            I YI AG  DL TT + L  L+  G   +E+GVP+SDP+ADGPVIQ A + +L  G     IL ML E+   +   + L +Y NPI+    G +  +  ++ +G++GL++PD+PL E +++
Sbjct:    5 IAYIPAGFPDLETTRKILIALNELGITGVEIGVPFSDPVADGPVIQLAHSVALRNGVTMKKILEMLGEI--SVDYDLYLMSYLNPIVNYPEGKEKLLDELKKLGVKGLIIPDLPLREVKNV 123          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACTN (Tryptophan synthase alpha chain OS=Bacteroides thetaiotaomicron GN=trpA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  268 YITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            Y  AG+  L  T   ++ L+  G  +IE+G+P+SDP+ADG VIQ AAT++L  G +   +   L+ +  ++S P+    Y NPI++ G +NF     + GI G+++PD+P  +
Sbjct:   19 YFCAGNPTLDGTVNVIRTLEKHGVSMIEVGIPFSDPMADGIVIQNAATQALRNGMSLKILFEQLRNIRQEVSIPLVFMGYLNPIMQFGFENFCRKCVECGIDGVIIPDLPFRD 131          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERPY (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F +L  + + A +P++  GD   + +   +  L + G+D +ELG+P+SDPLADGP IQ AA R+ A G        +L E+     + PI L  Y N +   G+D+F     ++G+  +++ DVP EE+   +  A+++ I
Sbjct:    6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERPS (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F +L  + + A +P++  GD   + +   +  L + G+D +ELG+P+SDPLADGP IQ AA R+ A G        +L E+     + PI L  Y N +   G+D+F     ++G+  +++ DVP EE+   +  A+++ I
Sbjct:    6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERPB (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F +L  + + A +P++  GD   + +   +  L + G+D +ELG+P+SDPLADGP IQ AA R+ A G        +L E+     + PI L  Y N +   G+D+F     ++G+  +++ DVP EE+   +  A+++ I
Sbjct:    6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_YERP3 (Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F +L  + + A +P++  GD   + +   +  L + G+D +ELG+P+SDPLADGP IQ AA R+ A G        +L E+     + PI L  Y N +   G+D+F     ++G+  +++ DVP EE+   +  A+++ I
Sbjct:    6 QLFKQLAAKKEGAFVPFVQLGDPSPAMSLNIIDTLIAAGADALELGIPFSDPLADGPTIQNAALRAFAAGVTPAICFEILAEIRQKHPTIPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAPFRAAALRHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VIBFM (Tryptophan synthase alpha chain OS=Vibrio fischeri (strain MJ11) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 44/141 (31.21%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F +L+K+ + A +P++T GD +   +   ++ L   G+D +ELG+P+SDPLADGP IQ A  R+L   T       ++ ++  +    PI L  Y N +   G+D+F +  +  G+  +++ DVP  E++  ++ A+++ I
Sbjct:    8 FAQLEKKNQGAFVPFVTIGDPNPELSYNIMETLIEAGADALELGIPFSDPLADGPTIQGANIRALDSKTTPAICFELIAKIRSKYPETPIGLLVYANLVFANGIDDFYAKCQQAGVDSVLIADVPTNESQEFRESAIEHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VESOH (Tryptophan synthase alpha chain OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQK 624
            L+  F    K  KV  IP+ITAGDS L  T E +++L   G+D+IELGVP+SDP+ADGPVI  +  R++  G + + + +++K+      +  I L  Y NPI   G   F +   + G+ G++V D+P EE   L++
Sbjct:    4 LSRVFFDSPKNHKV-FIPFITAGDSGLDNTFELMQVLVKNGADVIELGVPFSDPMADGPVISRSYERTVKDGVSLSDVFTVVKKFRQTNNTTAIVLMGYLNPIEVFGYQPFANAASESGVDGVLVVDMPPEEAYGLKQ 140          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SODGM (Tryptophan synthase alpha chain OS=Sodalis glossinidius (strain morsitans) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 47/145 (32.41%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG---TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F++L  + + A +P++T GD + + +   +  L   G+D +ELG+P+SDPLADGP IQ A  R+ + G    +   +L+ +++  P I  PI L  Y N +   G+D F +   ++GI  ++V DVPL+E+   ++ A+++ +
Sbjct:    6 QLFSQLAARHEGAFVPFVTLGDPNPTLSLRIIDTLIDAGADALELGIPFSDPLADGPTIQNANLRAFSSGVTPAHCFEMLATIRQKYPAI--PIGLLMYANLVYNEGIDAFYAHCAEVGIDSVLVADVPLQESLPFRQAALRHNV 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PYRKO (Tryptophan synthase alpha chain OS=Pyrococcus kodakaraensis GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  250 KVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPL----EETESLQKEAMK 636
            K +LIPY+TAGD  +  T E L  ++     +IELG+P+SDP+ADG  IQ +  R+L  G   +    +L+E     S P+ L TYYNP+ + GV  F+   +  G  G++V D+P+    E  ++ ++E +K
Sbjct:    4 KGSLIPYLTAGDPSVEKTLEFLLAVEEFAG-LIELGIPFSDPMADGKTIQESHYRALRNGFKLDDTFRILREFRRHSSTPVILMTYYNPVFRTGVKKFLGEAKASGADGILVVDLPVSHAGEFLDAAKEEGLK 135          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_THEP11.294e-1839.67Tryptophan synthase alpha chain OS=Thermotoga petr... [more]
TRPA_BACTN1.294e-1836.28Tryptophan synthase alpha chain OS=Bacteroides the... [more]
TRPA_YERPY2.207e-1832.17Tryptophan synthase alpha chain OS=Yersinia pseudo... [more]
TRPA_YERPS2.207e-1832.17Tryptophan synthase alpha chain OS=Yersinia pseudo... [more]
TRPA_YERPB2.207e-1832.17Tryptophan synthase alpha chain OS=Yersinia pseudo... [more]
TRPA_YERP32.207e-1832.17Tryptophan synthase alpha chain OS=Yersinia pseudo... [more]
TRPA_VIBFM2.207e-1831.21Tryptophan synthase alpha chain OS=Vibrio fischeri... [more]
TRPA_VESOH2.207e-1838.41Tryptophan synthase alpha chain OS=Vesicomyosocius... [more]
TRPA_SODGM2.207e-1832.41Tryptophan synthase alpha chain OS=Sodalis glossin... [more]
TRPA_PYRKO2.207e-1836.84Tryptophan synthase alpha chain OS=Pyrococcus koda... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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