FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:1..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PHOLL (Tryptophan synthase alpha chain OS=Photorhabdus luminescens subsp. laumondii GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 45/143 (31.47%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            + F +L+ + + A +P++T GD     + + +  L + G+D +EL +P+SDPLADGP IQ A  R+ +          +L ++  +    PI L  Y N +   G+D F    +D  I  ++V DVP+ E+   +  AMK+ I
Sbjct:    6 QLFKQLESRKQGAFVPFVTLGDPTPELSLKIIDALITGGADALELSIPFSDPLADGPTIQNANLRAFSSNVTPTLCFELLTKIRAKYPDIPIGLLMYANLVFHHGIDEFYRRCKDTDIDSVLVADVPMSESRPFRTAAMKHGI 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PASMU (Tryptophan synthase alpha chain OS=Pasteurella multocida GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 46/144 (31.94%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F++L+++ + A +P++T  D +L+ + E ++ L   G+D +ELG P+SDP+ DGPVIQAA  R+L  G + +A   +L +V     + PI+L    N +  +G++ F     ++G+  +++ D+PL         A K  I+ V
Sbjct:    8 FSQLQQKQQGAFVPFVTLCDPNLAQSFEIIQTLVENGADALELGFPFSDPMLDGPVIQAANQRALVAGCSTDASFQLLTQVRSTYPTLPISLLLCANLVYAQGIERFYQRCAEVGVDAVLIADLPLFAHREFTVMAEKYSIQQV 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CALS8 (Tryptophan synthase alpha chain OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F  LK +GK A I Y T G      T + +KL+ S   D++ELG P+SDP+ADG VIQ A+ ++L      + +   +++   +   PIA+  Y N + KRG++ F    +D G   +++PD+  EE+   +    +N +  +
Sbjct:    8 FEELKIKGKKAFIGYTTFGYPTKGETLDYIKLIYSY-VDVLELGFPFSDPIADGEVIQRASVKALKEDIKLDHLFYSIEKF--KKDKPIAIMLYANTVYKRGIEKFFKDCKDFGADAVIIPDISYEESAEFKAACRENGVHYI 147          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BUCSC (Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  250 KVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQI-SCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            K   IP+I  GD  +  + + + +L   G+D +ELG P+SDPL+DG  IQ A  R+ +   N      ML+++  +  + PI L  Y N I K G++NF     ++GI  +++ D+P+EE+   +K A+ N I  V
Sbjct:   16 KGCFIPFIILGDPSIEMSLKIIDVLIENGADGLELGFPFSDPLSDGKTIQKAHLRAFSSKMNIYLCFEMLQKIRKKYNTIPIGLLLYANLIFKFGINNFYLKCFNVGIDSVLIADLPVEESNDFRKCAIANNISSV 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_VIBME (Tryptophan synthase alpha chain OS=Vibrio metschnikovii GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKI 645
            F RL    + A +P++T GD +   +   ++ L   G+D +ELG+P+SDPLADGP IQ A + +L  GT         +  +     PI L  Y N +  RG+DNF    +  G+  +++ DVP  E+      A K  I
Sbjct:    8 FQRLAAHNQGAFVPFVTIGDPNPQQSLRIMQTLVEAGADALELGIPFSDPLADGPTIQGAIS-ALDSGTKPIRCFEADQAPIRAQDIPIYLLMYANLVYARGIDNFYQRCQQAGVDSVLIADVPTNESAEFGPAAKKYAI 146          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_HAEIG (Tryptophan synthase alpha chain OS=Haemophilus influenzae (strain PittGG) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV---VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F  L  + + A +P++T  D     + E +  L   G+D +ELG P+SDPL DGPVIQAA  R+L  G +      +L++V    P+I  PI+L    N I  +G+D F     ++G+  ++V D+PL   E   + A K+ I+ V
Sbjct:    8 FATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLDGPVIQAANNRALTAGHSSEDSFKLLEKVRSKYPEI--PISLLLCANLIFAKGLDAFYQRCAEVGVDAVLVADIPLLAKEDYVQAAKKHGIQPV 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_HAEIE (Tryptophan synthase alpha chain OS=Haemophilus influenzae (strain PittEE) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV---VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F  L  + + A +P++T  D     + E +  L   G+D +ELG P+SDPL DGPVIQAA  R+L  G +      +L++V    P+I  PI+L    N I  +G+D F     ++G+  ++V D+PL   E   + A K+ I+ V
Sbjct:    8 FATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLDGPVIQAANNRALTAGHSSEDSFKLLEKVRSKYPEI--PISLLLCANLIFAKGLDAFYQRCAEVGVDAVLVADIPLLAKEDYVQAAKKHGIQPV 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_HAEI8 (Tryptophan synthase alpha chain OS=Haemophilus influenzae (strain 86-028NP) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV---VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F  L  + + A +P++T  D     + E +  L   G+D +ELG P+SDPL DGPVIQAA  R+L  G +      +L++V    P+I  PI+L    N I  +G+D F     ++G+  ++V D+PL   E   + A K+ I+ V
Sbjct:    8 FATLNAKNEGAFVPFVTLCDPTFDCSFEIICTLVDNGADALELGFPFSDPLLDGPVIQAANNRALTAGHSSEDSFKLLEKVRSKYPEI--PISLLLCANLIFAKGLDAFYQRCAEVGVDAVLVADIPLLAKEDYVQAAKKHGIQPV 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_DICTD (Tryptophan synthase alpha chain OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 660
            K   +  IP+  +G        E   L +    DI+ELGVP+SDP+ADGPV+Q    R++ RG N N+ L  L       +  + L  Y+N +++  ++  +   +D  I+GLV+PD+P+EE E+L     K  ++L+LF
Sbjct:   11 KSKSLFFIPFFVSGFPSFDFL-EVFLLKNKDKIDILELGVPFSDPVADGPVLQEINYRAMVRGVNLNSTLDWLVRSGVSRNIDVILLLYFN-LIQNKLEENLKRFKDTEIKGLVIPDLPMEEAETLIPLFNKYNLDLILF 148          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_COREF (Tryptophan synthase alpha chain OS=Corynebacterium efficiens GN=trpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFN---AILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + FTRL + G+ A +P+I   D     + + +      G+D +ELGVP+SDP+ADGP +  +  R+L  G+  +   A+++ ++E  P+I  PI +  Y N    RG+D F     + G   +++PDVP+ E
Sbjct:    6 DMFTRLDEAGEGAFVPFIMLNDPSPEDSFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGSTVDSCLALIARVREAYPEI--PIGMLIYGNVPFTRGLDKFYREFAEAGADSILLPDVPVRE 135          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_PHOLL1.581e-1631.47Tryptophan synthase alpha chain OS=Photorhabdus lu... [more]
TRPA_PASMU1.581e-1631.94Tryptophan synthase alpha chain OS=Pasteurella mul... [more]
TRPA_CALS81.581e-1632.17Tryptophan synthase alpha chain OS=Caldicellulosir... [more]
TRPA_BUCSC1.581e-1634.56Tryptophan synthase alpha chain OS=Buchnera aphidi... [more]
TRPA_VIBME2.065e-1633.57Tryptophan synthase alpha chain OS=Vibrio metschni... [more]
TRPA_HAEIG2.065e-1634.93Tryptophan synthase alpha chain OS=Haemophilus inf... [more]
TRPA_HAEIE2.065e-1634.93Tryptophan synthase alpha chain OS=Haemophilus inf... [more]
TRPA_HAEI82.065e-1634.93Tryptophan synthase alpha chain OS=Haemophilus inf... [more]
TRPA_DICTD2.065e-1634.29Tryptophan synthase alpha chain OS=Dictyoglomus tu... [more]
TRPA_COREF2.065e-1633.33Tryptophan synthase alpha chain OS=Corynebacterium... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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