FC932178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP2 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26 Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 F +LK++G+ A + ++ AGD DL+T+ + LK L + G+DIIE+G+P++DP+ADGP IQAA R+L GT + L ++ + + P+ L YYNPI GVD F++ + G+ GL++ D+P EE L AMK + + Sbjct: 9 FAQLKREGRPAFVTFVMAGDPDLATSLQLLKALPTAGADIIEIGMPFTDPMADGPAIQAAGLRALHGGTTLHKTLELVGDFRKDDATTPVVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDAELCLPAMKAGLNFI 152
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METMA (Tryptophan synthase alpha chain OS=Methanosarcina mazei GN=trpA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26 Identity = 58/160 (36.25%), Postives = 95/160 (59.38%), Query Frame = 1 Query: 175 TPMAALTASPTVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 T + A+ P + +E F L+++ + ALI Y+ AGD ++E +K L G+DIIELG P+SDP+ADGP IQ A R+LA G + + + + ++ P+ TYYNP+ + GV+ F+ + GI GL++PD+P+EE L+ + ++L+ Sbjct: 3 TELKAVLKRPKI--SEKFDELREKKEGALIGYVMAGDPTFEASSEVVKALAKGGADIIELGFPFSDPVADGPTIQVAGQRALAEGMDIERYFAFARAL--EVDVPLVCMTYYNPVFRYGVEKFVENAAEAGISGLIIPDIPVEEAADLKTGCDAHGLDLI 158
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_AZOBR (Tryptophan synthase alpha chain OS=Azospirillum brasilense GN=trpA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26 Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 +A F LK +G+ L+ +ITAGD DL T L L + G+D+IELG+P+SDP+ADGP IQAA+ R+L GT L +++ P+ L YYNPI GVD F++ + G+ GL+V D+P EE E L A+K + + Sbjct: 14 IARRFAALKAEGRAGLVTFITAGDPDLETCRAVLHGLPAAGADLIELGLPFSDPMADGPAIQAASLRALHAGTTARKTLDLVRGFRETDADTPVILMGYYNPIHAYGVDRFLADAIEAGVDGLIVVDLPPEEDEELCIPALKAGVNFI 161
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METPP (Tryptophan synthase alpha chain OS=Methylibium petroleiphilum (strain PM1) GN=trpA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26 Identity = 58/135 (42.96%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 615 +A TF RL+ Q + ALIPYITAGD T + + + G+D+IELGVP+SDP+ADGPVIQ A+ R+LA+G +L+M++ + P+ L Y NP+ + G+D F++ + G+ G++V D P EE E+ Sbjct: 4 IAATFERLRGQRRTALIPYITAGDPYADATVDIMLAMAGAGADVIELGVPFSDPMADGPVIQKASERALAKGIGMGQVLAMVRSFREHNDTTPVVLMGYANPVERYGIDRFVADAKSAGVDGVLVVDYPPEECEA 138
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOBB (Tryptophan synthase alpha chain OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=trpA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26 Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ 621 +++ F LK++G+ AL+ ++TAGD DL+TT + + L+ G+D+IELGVP+SDP+ADGP IQ ++ R+LA GT AIL ++ + + PI L Y+NPI G + F G+ L+V D+P EE L+ Sbjct: 4 ISDRFASLKERGEKALVTFVTAGDPDLATTEKVVLELERAGADLIELGVPFSDPMADGPTIQLSSDRALASGTTLPAILELVSRLREKTQVPIVLMGYFNPIFAYGSERFAFDAAQAGVDALLVVDLPPEEAAELK 139
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CLOAB (Tryptophan synthase alpha chain OS=Clostridium acetobutylicum GN=trpA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26 Identity = 53/143 (37.06%), Postives = 94/143 (65.73%), Query Frame = 1 Query: 226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 F LK + K A+IP++T+G D+ TT + + ++ G+D+IELG+PYSDP+ADGP+IQ +++ +L G I++M+KEV + PI Y+ + K G++ F+ ++ G+ G+V+PD+PLEE E +++ A + + ++ Sbjct: 9 FKELKYKNKKAMIPFVTSGYPDVETTKKIVIEMEKSGADLIELGIPYSDPVADGPIIQISSSGALNNGLKIKDIMNMVKEVRKNVKIPIVYMGYFGCVFKYGLEKFIKDSKESGVDGIVIPDLPLEERERVKEIADRYEFYII 151
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSM (Tryptophan synthase alpha chain OS=Geobacter sp. (strain M21) GN=trpA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26 Identity = 56/136 (41.18%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ 621 +++ F LK++G+ AL+ ++TAGD DL+TT + + L+ G+D++ELGVP+SDP+ADGP IQ ++ R+LA GT AIL ++ + + PI L Y+NPI G + F G+ L+V D+P EE L+ Sbjct: 4 ISDRFASLKERGEKALVTFVTAGDPDLATTEKVVLELERAGADLVELGVPFSDPMADGPTIQLSSDRALASGTTLPAILELVSRLREKTQVPIVLMGYFNPIFAYGSERFAFDAAQAGVDALLVVDLPPEEAAELK 139
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_DESOH (Tryptophan synthase alpha chain OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=trpA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26 Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618 + ETF RL + + AL+ ++TAGD + T+ ++ + G DI+ELGVP+SDP ADGPVIQ ++ R+LA GTN + M + PI LF+YYNPI + G +NF + G G++V D+P EE+ L Sbjct: 4 ITETFDRLAAKKEKALVGFVTAGDPAIETSEAIIRAMCEAGIDILELGVPFSDPTADGPVIQRSSQRALANGTNLQTVFDMTATLRKTFQGPIILFSYYNPIFRYGAENFYRDAKQAGADGVLVVDLPPEESAEL 138
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRPN (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae GN=trpA PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26 Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 L E +K GK +PYI AGD + L AE + L+ G IE+G+P+SDP+ADGPVI+ A RSLA GT+ A++ LK + +I P+ + TY+NP+ + GV+NF+ + D ++GL++PD+P E ++ I L+ Sbjct: 5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLANTDIALI 151
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRP7 (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain 70585) GN=trpA PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26 Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1 Query: 214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654 L E +K GK +PYI AGD + L AE + L+ G IE+G+P+SDP+ADGPVI+ A RSLA GT+ A++ LK + +I P+ + TY+NP+ + GV+NF+ + D ++GL++PD+P E ++ I L+ Sbjct: 5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLANTDIALI 151 The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bpback to top |