FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP2 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F +LK++G+ A + ++ AGD DL+T+ + LK L + G+DIIE+G+P++DP+ADGP IQAA  R+L  GT  +  L ++ +      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE   L   AMK  +  +
Sbjct:    9 FAQLKREGRPAFVTFVMAGDPDLATSLQLLKALPTAGADIIEIGMPFTDPMADGPAIQAAGLRALHGGTTLHKTLELVGDFRKDDATTPVVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDAELCLPAMKAGLNFI 152          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METMA (Tryptophan synthase alpha chain OS=Methanosarcina mazei GN=trpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26
Identity = 58/160 (36.25%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  175 TPMAALTASPTVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            T + A+   P +  +E F  L+++ + ALI Y+ AGD     ++E +K L   G+DIIELG P+SDP+ADGP IQ A  R+LA G +     +  + +  ++  P+   TYYNP+ + GV+ F+    + GI GL++PD+P+EE   L+     + ++L+
Sbjct:    3 TELKAVLKRPKI--SEKFDELREKKEGALIGYVMAGDPTFEASSEVVKALAKGGADIIELGFPFSDPVADGPTIQVAGQRALAEGMDIERYFAFARAL--EVDVPLVCMTYYNPVFRYGVEKFVENAAEAGISGLIIPDIPVEEAADLKTGCDAHGLDLI 158          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_AZOBR (Tryptophan synthase alpha chain OS=Azospirillum brasilense GN=trpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.686e-26
Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            +A  F  LK +G+  L+ +ITAGD DL T    L  L + G+D+IELG+P+SDP+ADGP IQAA+ R+L  GT     L +++         P+ L  YYNPI   GVD F++   + G+ GL+V D+P EE E L   A+K  +  +
Sbjct:   14 IARRFAALKAEGRAGLVTFITAGDPDLETCRAVLHGLPAAGADLIELGLPFSDPMADGPAIQAASLRALHAGTTARKTLDLVRGFRETDADTPVILMGYYNPIHAYGVDRFLADAIEAGVDGLIVVDLPPEEDEELCIPALKAGVNFI 161          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_METPP (Tryptophan synthase alpha chain OS=Methylibium petroleiphilum (strain PM1) GN=trpA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 58/135 (42.96%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETES 615
            +A TF RL+ Q + ALIPYITAGD     T + +  +   G+D+IELGVP+SDP+ADGPVIQ A+ R+LA+G     +L+M++       + P+ L  Y NP+ + G+D F++  +  G+ G++V D P EE E+
Sbjct:    4 IAATFERLRGQRRTALIPYITAGDPYADATVDIMLAMAGAGADVIELGVPFSDPMADGPVIQKASERALAKGIGMGQVLAMVRSFREHNDTTPVVLMGYANPVERYGIDRFVADAKSAGVDGVLVVDYPPEECEA 138          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOBB (Tryptophan synthase alpha chain OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=trpA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ 621
            +++ F  LK++G+ AL+ ++TAGD DL+TT + +  L+  G+D+IELGVP+SDP+ADGP IQ ++ R+LA GT   AIL ++  +  +   PI L  Y+NPI   G + F       G+  L+V D+P EE   L+
Sbjct:    4 ISDRFASLKERGEKALVTFVTAGDPDLATTEKVVLELERAGADLIELGVPFSDPMADGPTIQLSSDRALASGTTLPAILELVSRLREKTQVPIVLMGYFNPIFAYGSERFAFDAAQAGVDALLVVDLPPEEAAELK 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CLOAB (Tryptophan synthase alpha chain OS=Clostridium acetobutylicum GN=trpA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26
Identity = 53/143 (37.06%), Postives = 94/143 (65.73%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            F  LK + K A+IP++T+G  D+ TT + +  ++  G+D+IELG+PYSDP+ADGP+IQ +++ +L  G     I++M+KEV   +  PI    Y+  + K G++ F+   ++ G+ G+V+PD+PLEE E +++ A + +  ++
Sbjct:    9 FKELKYKNKKAMIPFVTSGYPDVETTKKIVIEMEKSGADLIELGIPYSDPVADGPIIQISSSGALNNGLKIKDIMNMVKEVRKNVKIPIVYMGYFGCVFKYGLEKFIKDSKESGVDGIVIPDLPLEERERVKEIADRYEFYII 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSM (Tryptophan synthase alpha chain OS=Geobacter sp. (strain M21) GN=trpA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 56/136 (41.18%), Postives = 87/136 (63.97%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQ 621
            +++ F  LK++G+ AL+ ++TAGD DL+TT + +  L+  G+D++ELGVP+SDP+ADGP IQ ++ R+LA GT   AIL ++  +  +   PI L  Y+NPI   G + F       G+  L+V D+P EE   L+
Sbjct:    4 ISDRFASLKERGEKALVTFVTAGDPDLATTEKVVLELERAGADLVELGVPFSDPMADGPTIQLSSDRALASGTTLPAILELVSRLREKTQVPIVLMGYFNPIFAYGSERFAFDAAQAGVDALLVVDLPPEEAAELK 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_DESOH (Tryptophan synthase alpha chain OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=trpA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            + ETF RL  + + AL+ ++TAGD  + T+   ++ +   G DI+ELGVP+SDP ADGPVIQ ++ R+LA GTN   +  M   +      PI LF+YYNPI + G +NF    +  G  G++V D+P EE+  L
Sbjct:    4 ITETFDRLAAKKEKALVGFVTAGDPAIETSEAIIRAMCEAGIDILELGVPFSDPTADGPVIQRSSQRALANGTNLQTVFDMTATLRKTFQGPIILFSYYNPIFRYGAENFYRDAKQAGADGVLVVDLPPEESAEL 138          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRPN (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae GN=trpA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLANTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRP7 (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain 70585) GN=trpA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLANTDIALI 151          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_RHOP21.686e-2640.28Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_METMA1.686e-2636.25Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_AZOBR1.686e-2641.89Tryptophan synthase alpha chain OS=Azospirillum br... [more]
TRPA_METPP2.202e-2642.96Tryptophan synthase alpha chain OS=Methylibium pet... [more]
TRPA_GEOBB2.202e-2641.91Tryptophan synthase alpha chain OS=Geobacter bemid... [more]
TRPA_CLOAB2.202e-2637.06Tryptophan synthase alpha chain OS=Clostridium ace... [more]
TRPA_GEOSM2.875e-2641.18Tryptophan synthase alpha chain OS=Geobacter sp. (... [more]
TRPA_DESOH2.875e-2642.22Tryptophan synthase alpha chain OS=Desulfococcus o... [more]
TRPA_STRPN3.755e-2638.93Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_STRP73.755e-2638.93Tryptophan synthase alpha chain OS=Streptococcus p... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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