FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRZP (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain P1031) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRPJ (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRPI (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRP4 (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKATGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACSK (Tryptophan synthase alpha chain OS=Bacillus clausii (strain KSM-K16) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            K+G +  IP+ITAGD     T      L   G+D++ELG+PYSDPLADGPVIQ A+ R+LA G      ++++ E+  + ++ P+ +FTY NP+L+ G + F  T  D GI GL+VPD+P EE+E+L  E  K  + L+
Sbjct:   10 KKGNL-FIPFITAGDPVREATIALALSLQRSGADVLELGIPYSDPLADGPVIQNASKRALAGGMTLAKAMALVPEMRKEGLTIPVIVFTYANPLLQFGFERFCETACDYGIDGLLVPDLPFEESETLANECEKQGLALI 147          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACHD (Tryptophan synthase alpha chain OS=Bacillus halodurans GN=trpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  250 KVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            K   IP+ITAGD +   T E    L+  G+DI+ELG+PYSDPLADGPVIQAA+ R+L         LS++ ++  Q ++ P+ +FTY NP+L+ G + F+    D  + G++VPD+P EE E LQ    ++ + L+
Sbjct:   12 KNLFIPFITAGDPNPEVTIELALTLEEAGADILELGIPYSDPLADGPVIQAASKRALKHEMTLEKALSLVPKMRAQGLTIPVIVFTYVNPLLQYGEEQFVKRAADYQVDGILVPDMPFEEGEVLQAACQEHNLSLI 147          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOSK (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            +TF RL+ +GK A + YI AGD DL T+   ++ L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L M++         PI +  YYNPI  RGV+ F++   + GI GL+V D+P EE   L
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLAVMRGLPEAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLTRTLEMVRAFRAENAETPIVMMGYYNPIYARGVETFLAEATEAGIDGLIVVDLPPEEDAEL 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS4 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            +TF RL+ +GK A + YI AGD DL T+   ++ L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L M++         PI +  YYNPI  RGV+ F++   + GI GL+V D+P EE   L
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLAVMRGLPEAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLTRTLEMVRAFRAENAETPIVMMGYYNPIYARGVETFLAEATEAGIDGLIVVDLPPEEDAEL 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS1 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=trpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            +TF RL+ +GK A + YI AGD DL T+   ++ L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L M++         PI +  YYNPI  RGV+ F++   + GI GL+V D+P EE   L
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLAVMRGLPEAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLTRTLEMVRAFRAENAETPIVMMGYYNPIYARGVETFLAEATEAGIDGLIVVDLPPEEDAEL 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU5 (Tryptophan synthase alpha chain OS=Pseudomonas stutzeri (strain A1501) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F  LK+Q + AL+ +ITAGD D +T+ + LK L + G+D+IELG+P++DP+ADGP IQ A  R+LA   +    L M++E      + PI L  Y+NPI K GV+ F++   + G+ GL+V D+P E  E L   A    I+ +  T
Sbjct:    4 LLTRFDELKQQNRAALVTFITAGDPDYATSLQILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALAAKQDLAKTLQMVREFRQDDQTTPIVLMGYFNPIHKMGVERFIAEAVEAGVDGLIVVDLPPEHNEDLCDPAQAAGIDFIRLT 154          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_STRZP4.905e-2638.93Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_STRPJ4.905e-2638.93Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_STRPI4.905e-2638.93Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_STRP44.905e-2638.93Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_BACSK4.905e-2643.88Tryptophan synthase alpha chain OS=Bacillus clausi... [more]
TRPA_BACHD6.405e-2642.65Tryptophan synthase alpha chain OS=Bacillus halodu... [more]
TRPA_RHOSK8.366e-2644.03Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_RHOS48.366e-2644.03Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_RHOS18.366e-2644.03Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_PSEU51.093e-2541.06Tryptophan synthase alpha chain OS=Pseudomonas stu... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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