FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEMY (Tryptophan synthase alpha chain OS=Pseudomonas mendocina (strain ymp) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/151 (39.07%), Postives = 88/151 (58.28%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F  LK + + AL+ ++TAGD D +T+   LK L   G+D+IELG+P++DP+ADGP IQ A  R+LA        L M++E      S P+ L  YYNPI   GV+ F+S  ++ G+ GL+V D+P E  + L + A    ++ +  T
Sbjct:    4 LQNRFAELKAENRAALVTFVTAGDPDYATSLSILKGLPEAGADVIELGMPFTDPMADGPAIQLANIRALAGKQGMQQTLQMVREFRAGNQSTPLVLMGYYNPIFVYGVERFISDAKEAGVDGLIVVDLPPEHNDELCEPAQSAGLDFIRLT 154
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURPS (Tryptophan synthase alpha chain OS=Burkholderia pseudomallei GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURP6 (Tryptophan synthase alpha chain OS=Burkholderia pseudomallei (strain 668) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURP0 (Tryptophan synthase alpha chain OS=Burkholderia pseudomallei (strain 1106a) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURMS (Tryptophan synthase alpha chain OS=Burkholderia mallei (strain SAVP1) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURMA (Tryptophan synthase alpha chain OS=Burkholderia mallei GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURM9 (Tryptophan synthase alpha chain OS=Burkholderia mallei (strain NCTC 10229) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURM7 (Tryptophan synthase alpha chain OS=Burkholderia mallei (strain NCTC 10247) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEET 609
            +  TF  L  QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEES 136
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRZT (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L +    +K  GK   +PYI AGD +  L   AE +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTKKLNAIKAAGKGIFVPYIMAGDHEKGLDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151
[Close]
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRZJ (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain JJA) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L    E +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKAAGKGIFVPYIMAGDHEKGLDGLGETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_PSEMY1.093e-2539.07Tryptophan synthase alpha chain OS=Pseudomonas men... [more]
TRPA_BURPS1.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ps... [more]
TRPA_BURP61.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ps... [more]
TRPA_BURP01.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ps... [more]
TRPA_BURMS1.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BURMA1.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BURM91.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BURM71.093e-2544.36Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_STRZT1.427e-2538.26Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_STRZJ1.427e-2538.26Tryptophan synthase alpha chain OS=Streptococcus p... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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