FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:1..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRR6 (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L    E +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKATGKGIFVPYIMAGDHEKGLDGLGETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_STRP2 (Tryptophan synthase alpha chain OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSD--LSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            L E    +K  GK   +PYI AGD +  L    E +  L+  G   IE+G+P+SDP+ADGPVI+ A  RSLA GT+  A++  LK +  +I  P+ + TY+NP+ + GV+NF+  + D  ++GL++PD+P E    ++       I L+
Sbjct:    5 LTEKLNAIKATGKGIFVPYIMAGDHEKGLDGLGETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEI--PLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALI 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURS3 (Tryptophan synthase alpha chain OS=Burkholderia sp. (strain 383) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK---EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG    ++L+ +K   E  P+   P+ L  Y NPI + GVD F +  +  G+ G++V D P EE
Sbjct:    4 IQQTFAALAEQGRKGLIPFITAGDPDPAKTVEFMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKSVLADVKRFRETDPK--TPVVLMGYANPIERMGVDTFAAEAQAAGVDGVLVVDYPPEE 135          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURM1 (Tryptophan synthase alpha chain OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=trpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L + G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG     +L+ +K       + P+ L  Y NPI + GVD F +  R  G+ G++V D P EE
Sbjct:    4 IQQTFAALAQQGRKGLIPFITAGDPDPAKTVEFMHALAAGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKHVLADVKRFRETNQTTPVVLMGYANPIERHGVDAFAADARAAGVDGVLVVDYPPEE 135          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSE14 (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L + F +LK +G+ AL+ +ITAGD    T+ + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M+ E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A  + I+ +  T
Sbjct:    4 LEQRFAQLKTEGRAALVTFITAGDPGYDTSLQVLKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALDAGQTLQKTLQMVSEFRVDDQTTPIVLMGYYNPIHRFGVEAFVAQAKEAGVDGLIIVDLPPEHDAELATPAQASGIDFIRLT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SYNFM (Tryptophan synthase alpha chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 56/145 (38.62%), Postives = 88/145 (60.69%), Query Frame = 1
Query:  220 ETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            E F +L+K+ + AL+ ++TAGD D   + E ++ +   G DI+ELG+P+SDP ADGPVIQ ++TR+L  G N +    M++E+      PI  F+YYNPIL  G   F     D G  G+++ D+P EE++ L ++     + L+
Sbjct:    6 EKFEQLRKRNEKALVGFVTAGDPDPGRSLEIIRTMCRSGVDILELGIPFSDPTADGPVIQRSSTRALKAGMNLSKAFEMIRELRGTCDVPIVAFSYYNPILAYGGAKFYRDALDSGADGVLIVDLPPEESDELTRQWPDRDLALI 150          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAE (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa GN=trpA PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F +LK++ + AL+ ++TAGD D +++ E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E     S  P+ L  Y+NPI   GV+ F++  +++G+ GL+V D+P E  E L   A    I+ +  T
Sbjct:    4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURCJ (Tryptophan synthase alpha chain OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK---EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L + G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG    ++L+ +K   E  P+   P+ L  Y NPI + GVD F +     G+ G++V D P EE
Sbjct:    4 IQQTFAALAEQGRKGLIPFITAGDPDPAKTVEFMHALAAGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKSVLADVKRFRETDPK--TPVVLMGYANPIERMGVDAFAAEAHAAGVDGVLVVDYPPEE 135          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURCH (Tryptophan synthase alpha chain OS=Burkholderia cenocepacia (strain HI2424) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK---EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L + G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG    ++L+ +K   E  P+   P+ L  Y NPI + GVD F +     G+ G++V D P EE
Sbjct:    4 IKQTFAALAEQGRKGLIPFITAGDPDPAKTVEFMHALAAGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKSVLADVKRFRETDPK--TPVVLMGYANPIERMGVDAFAAEAHAAGVDGVLVVDYPPEE 135          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURCC (Tryptophan synthase alpha chain OS=Burkholderia cenocepacia (strain MC0-3) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK---EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L + G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG    ++L+ +K   E  P+   P+ L  Y NPI + GVD F +     G+ G++V D P EE
Sbjct:    4 IKQTFAALAEQGRKGLIPFITAGDPDPAKTVEFMHALAAGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKSVLADVKRFRETDPK--TPVVLMGYANPIERMGVDAFAAEAHAAGVDGVLVVDYPPEE 135          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_STRR61.427e-2538.26Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_STRP21.427e-2538.26Tryptophan synthase alpha chain OS=Streptococcus p... [more]
TRPA_BURS31.427e-2545.52Tryptophan synthase alpha chain OS=Burkholderia sp... [more]
TRPA_BURM11.427e-2545.45Tryptophan synthase alpha chain OS=Burkholderia mu... [more]
TRPA_PSE141.864e-2539.07Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_SYNFM2.434e-2538.62Tryptophan synthase alpha chain OS=Syntrophobacter... [more]
TRPA_PSEAE2.434e-2539.07Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_BURCJ2.434e-2545.52Tryptophan synthase alpha chain OS=Burkholderia ce... [more]
TRPA_BURCH2.434e-2545.52Tryptophan synthase alpha chain OS=Burkholderia ce... [more]
TRPA_BURCC2.434e-2545.52Tryptophan synthase alpha chain OS=Burkholderia ce... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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