FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BURCA (Tryptophan synthase alpha chain OS=Burkholderia cenocepacia (strain AU 1054) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLK---EVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEE 606
            + +TF  L +QG+  LIP+ITAGD D + T E +  L + G+D+IELGVP+SDP+ADGPVIQ ++ R+LARG    ++L+ +K   E  P+   P+ L  Y NPI + GVD F +     G+ G++V D P EE
Sbjct:    4 IKQTFAALAEQGRKGLIPFITAGDPDPAKTVEFMHALAAGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKSVLADVKRFRETDPK--TPVVLMGYANPIERMGVDAFAAEAHAAGVDGVLVVDYPPEE 135          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SILPO (Tryptophan synthase alpha chain OS=Silicibacter pomeroyi GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  226 FTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESL 618
            F  LK QGK A + Y+ AGD D  T+ E +K L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L +  E      + PI +  YYNPI  RGVD F++  +  GI GL+V D+P EE   L
Sbjct:    8 FAELKAQGKKAFVSYVMAGDPDFDTSLELVKGLPGAGVDIIELGLPFTDPMADGPTIQLAGQRALDGGMTLQRTLDLATEFRKTDNTTPIVMMGYYNPIYSRGVDRFLADAKAAGIDGLIVVDLPPEEDSEL 139          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP5 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisA53) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 59/151 (39.07%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            T  L   F  LKKQG+ A + ++ AGD DL T+ + L+ L   G+DIIE+G+P++DP+ADGP IQAA  R+L  GT     L +++       + P+ L  YYNPI   GV+ F+   +  G+ GL++ D+P EE   L   A+K  +  +
Sbjct:    2 TTRLDSRFADLKKQGRAAFVTFLMAGDPDLDTSLKLLQALPKAGADIIEIGMPFTDPMADGPAIQAAGLRALKAGTTLQKTLELVRAFRKADDATPLVLMGYYNPIYIYGVEPFLIDAKAAGVDGLIIVDLPPEEDAELCLPAIKAGLNFI 152          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_PSEA8 (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain LESB58) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 57/151 (37.75%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            L   F +LK++ + AL+ ++TAGD D +++ E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E    +   P+ L  Y+NPI   GV+ F++  +++G+ GL+V D+P E  E L   A    ++ +  T
Sbjct:    4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGESETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGLDFIRLT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_NITWN (Tryptophan synthase alpha chain OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 59/151 (39.07%), Postives = 86/151 (56.95%), Query Frame = 1
Query:  205 TVGLAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELV 654
            T  +   F  L+KQG+ A + ++ AGD D +T+   +K L   G+DIIE+G+P++DP+ADGP +QAA  R+L  G      L M+ E      S P+ L  YYNP+   GV+ F+   R  G+ GL+V D+P EE   L   AMK  +  +
Sbjct:    2 TTRIDTRFAELRKQGRSAFVTFLMAGDPDPATSLAIIKALPRAGADIIEIGMPFTDPMADGPAVQAAGRRALDAGMTLTGTLRMIGEFRKDDDSTPVVLMGYYNPVYIYGVEKFLDDARAAGVDGLIVVDLPPEEDSELCIPAMKAGLNFI 152          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAD (Tryptophan synthase alpha chain OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 55/150 (36.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARG-TNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLF 660
            + ETF RL+  G++AL+PY+T G  +  +T E +  L++ G+ + ELG+P+SDPLADG  IQ A  R+L  G T  + I ++ +     +  P+ L  YYNP+L+ G++   + +   G  G ++PD+PLEE   L+  A  + ++L++F
Sbjct:    4 ITETFARLRSSGRIALMPYLTVGFPERESTLELVPALEAAGASLFELGIPFSDPLADGATIQRATQRALENGVTIADCITTVAQLRARNVKAPLLLMGYYNPLLRYGLERACAELAAAGGDGWIIPDLPLEEAAELRPIAAAHHLDLIMF 153          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACHK (Tryptophan synthase alpha chain OS=Bacillus thuringiensis subsp. konkukian GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE---SLQKEAMKNKIELVLFT 663
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE +    L +EA    I LV  T
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVREEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACC3 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain 03BB102) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE---SLQKEAMKNKIELVLFT 663
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE +    L +EA    I LV  T
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACAN (Tryptophan synthase alpha chain OS=Bacillus anthracis GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE---SLQKEAMKNKIELVLFT 663
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE +    L +EA    I LV  T
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVT 154          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_BACAH (Tryptophan synthase alpha chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  241 KQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETE---SLQKEAMKNKIELVLFT 663
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE +    L +EA    I LV  T
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVT 154          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_BURCA2.434e-2545.52Tryptophan synthase alpha chain OS=Burkholderia ce... [more]
TRPA_SILPO3.179e-2545.45Tryptophan synthase alpha chain OS=Silicibacter po... [more]
TRPA_RHOP53.179e-2539.07Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_PSEA83.179e-2537.75Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_NITWN3.179e-2539.07Tryptophan synthase alpha chain OS=Nitrobacter win... [more]
TRPA_CHLAD3.179e-2536.67Tryptophan synthase alpha chain OS=Chloroflexus ag... [more]
TRPA_BACHK3.179e-2540.28Tryptophan synthase alpha chain OS=Bacillus thurin... [more]
TRPA_BACC33.179e-2540.28Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_BACAN3.179e-2540.28Tryptophan synthase alpha chain OS=Bacillus anthra... [more]
TRPA_BACAH3.179e-2540.28Tryptophan synthase alpha chain OS=Bacillus thurin... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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