FC932190

Overview
NameFC932190
Unique NameFC932190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15468 contig Ccv1_Contig15468:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: MRLCA_RAT (Myosin regulatory light chain RLC-A OS=Rattus norvegicus GN=Rlc-a PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 37/127 (29.13%), Postives = 64/127 (50.39%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDF 386
            KEAF + D +  G I   +L  ++ S+G NPT   L ++++E     P +F  FL +  + +     +  +R+AF   D++  G +    LR +LT++G++    E DE  RE  +   G   Y +F
Sbjct:   35 KEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLDAMMNE--APGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEAIGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEF 159          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: MYL4_HUMAN (Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 3
Query:    6 KEAFTLFDTDGGG--KIAPSELGILMRSLGGNPTQAQLKSIIS----EEKLTAPFDFPRFLDLMA--KHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVA 404
            KEAF+LFD    G  KI   + G ++R+LG NPT A++  ++     EE      DF  FL ++      K +       +  +V DK++ G V  ++LRH+L ++GEK+  +E ++ +   +  ++G I YE F+  +++
Sbjct:   57 KEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQE-DANGCINYEAFVKHIMS 196          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 44/135 (32.59%), Postives = 62/135 (45.93%), Query Frame = 3
Query:    3 MKEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAP--FDFPRFLDLMAKHM-KPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 398
            M+  F  FD +G G+I+ SELG L  SLG   T  +L  +++E             F  L A         +  LR AF+V D D  G +S ++L  +L  +GEK    +    I  VD   DG I +E+F   M
Sbjct:   41 MERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CDPK2_ORYSJ (Calcium-dependent protein kinase isoform 2 OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 3
Query:    3 MKEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARM 398
            +K+ FT  DTD  G I   EL   +  LG   ++A++K ++    +      D+  F+       K E  D  L  AF+  DKDN+GF++  +L   L    E  + S   + I EVD  +DG+I YE+F A M
Sbjct:  390 LKQMFTNMDTDNSGTITYEELKAGLAKLGSKLSEAEVKQLMEAADVDGNGSIDYVEFITATMHRHKLER-DEHLFKAFQYFDKDNSGFITRDELESALIE-HEMGDTSTIKDIISEVDTDNDGRINYEEFCAMM 521          
The following BLAST results are available for this feature:
BLAST of FC932190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
MRLCA_RAT4.663e-1129.13Myosin regulatory light chain RLC-A OS=Rattus norv... [more]
MYL4_HUMAN6.090e-1130.50Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 ... [more]
CML10_ORYSJ6.090e-1132.59Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CDPK2_ORYSJ7.954e-1132.84Calcium-dependent protein kinase isoform 2 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34205F01EF PostHarveN Citrus clementina cDNA clone C34205F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932190 ID=FC932190; Name=FC932190; organism=Citrus clementina; type=EST; length=682bp
GCATGAAGGAAGCCTTCACATTGTTCGACACAGACGGTGGCGGAAAGATC
GCGCCGTCTGAGCTAGGGATCCTAATGAGGTCACTTGGGGGAAACCCGAC
CCAGGCCCAGCTCAAATCCATAATCTCCGAGGAAAAACTAACGGCACCCT
TTGACTTCCCGCGGTTCCTTGACCTGATGGCCAAGCACATGAAACCTGAG
CCCTTCGATCGCCAGTTGCGTGACGCCTTCAAAGTGCTGGATAAAGATAA
CACCGGCTTCGTCTCCGTCTCCGATCTACGACACATTCTCACTTCTATTG
GGGAGAAGCTGGAGCCTTCCGAGTTTGATGAGTGGATCCGGGAAGTGGAT
GTCGGGTCCGACGGCAAGATCAAGTACGAGGATTTTATTGCCCGGATGGT
GGCCAAGTGACCTGTGATTGGATCTTCAACTTTAAGATATGATTAATGGG
TGTCTGTTTATTTTTAATGTTTTCTGCAATTAATGTTGAGTTTTGTGTAC
CTTTCTGTTTTAATGTGATGGATTTTGATGGTATTTCTTGAATTGTTGAA
AGTAATGCTGACCTTTTGTTAGGTATTTTTTTACATTCTGAACTTTGATG
TTATGTGTAATATATAATGTGTAGATGTTTCTTGAAATGAATTGGTTTAT
TAATGACAAANAAAAAAAAAAAAAAAAAAAAA
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