FC932190

Overview
NameFC932190
Unique NameFC932190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_METSE (Calmodulin OS=Metridium senile PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M +K
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_GECJA (Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M  K
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of FC932190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
CALM_MOUSE8.733e-3449.26Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]
CALM_METSE8.733e-3449.26Calmodulin OS=Metridium senile PE=1 SV=3[more]
CALM_HUMAN8.733e-3449.26Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2[more]
CALM_GECJA8.733e-3449.26Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV... [more]
CALM_DANRE8.733e-3449.26Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3[more]
CALM_CTEID8.733e-3449.26Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2... [more]
CALM_CHICK8.733e-3449.26Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2[more]
CALM_CAEEL8.733e-3449.26Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALM_BOVIN8.733e-3449.26Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2[more]
CALM_ANAPL8.733e-3449.26Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34205F01EF PostHarveN Citrus clementina cDNA clone C34205F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932190 ID=FC932190; Name=FC932190; organism=Citrus clementina; type=EST; length=682bp
GCATGAAGGAAGCCTTCACATTGTTCGACACAGACGGTGGCGGAAAGATC
GCGCCGTCTGAGCTAGGGATCCTAATGAGGTCACTTGGGGGAAACCCGAC
CCAGGCCCAGCTCAAATCCATAATCTCCGAGGAAAAACTAACGGCACCCT
TTGACTTCCCGCGGTTCCTTGACCTGATGGCCAAGCACATGAAACCTGAG
CCCTTCGATCGCCAGTTGCGTGACGCCTTCAAAGTGCTGGATAAAGATAA
CACCGGCTTCGTCTCCGTCTCCGATCTACGACACATTCTCACTTCTATTG
GGGAGAAGCTGGAGCCTTCCGAGTTTGATGAGTGGATCCGGGAAGTGGAT
GTCGGGTCCGACGGCAAGATCAAGTACGAGGATTTTATTGCCCGGATGGT
GGCCAAGTGACCTGTGATTGGATCTTCAACTTTAAGATATGATTAATGGG
TGTCTGTTTATTTTTAATGTTTTCTGCAATTAATGTTGAGTTTTGTGTAC
CTTTCTGTTTTAATGTGATGGATTTTGATGGTATTTCTTGAATTGTTGAA
AGTAATGCTGACCTTTTGTTAGGTATTTTTTTACATTCTGAACTTTGATG
TTATGTGTAATATATAATGTGTAGATGTTTCTTGAAATGAATTGGTTTAT
TAATGACAAANAAAAAAAAAAAAAAAAAAAAA
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