FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1012 contig Ccv1_Contig1012:11..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC1_BRAJA (Fumarate hydratase class II 1 OS=Bradyrhizobium japonicum GN=fumC1 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 2.810e-34
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S GHFELNV+KP++A  +LHS+RL+ DA+ SF ++CV GI+A+ +RIS+L+  SLMLVT+L PKIGYDNAA VAK AH  GTTLK+ AL+LG + ++EFD LV PEKM  P
Sbjct:  362 SQGHFELNVYKPVLAYNMLHSIRLMADAARSFTEHCVSGIRADEKRISELMQRSLMLVTALAPKIGYDNAAKVAKTAHANGTTLKEEALRLGFVTADEFDRLVQPEKMTKP 472          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_METEA (Fumarate hydratase class II OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=fumC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.176e-34
Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            S GHFELNVFKP+IA+ +L S+R+L DAS SF  NCV GI+AN +RIS L+  SLMLVT+L P IGYD AA +AK AHK GTTLK+ AL+LG +  EEF+ +V PE M+ PS
Sbjct:  359 SQGHFELNVFKPVIANAVLQSVRILADASVSFTDNCVVGIKANTDRISDLMSRSLMLVTALAPSIGYDKAAEIAKTAHKNGTTLKEEALRLGYVTDEEFERVVRPETMLAPS 470          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_CAEEL (Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.395e-33
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKP+I   +L S RLL D++ SF  +CV GI AN++ I+K++ ESLMLVT+LNP IGYDNAA +AK AHK GTTL   A+KLG+L  E+F   V PE M+GP
Sbjct:  390 SNGHFELNVFKPLIVRNVLQSTRLLADSAVSFTDHCVDGIVANKDNIAKIMRESLMLVTALNPHIGYDNAAKIAKTAHKNGTTLVQEAVKLGILTEEQFAQWVKPENMLGP 500          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIN (Fumarate hydratase class II OS=Leptospira interrogans GN=fumC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.107e-33
Identity = 66/112 (58.93%), Postives = 92/112 (82.14%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            ++G+FELNVFKP+I   +L+S+RLL D+  SF ++C RGI  N+E++++ L+ SLMLVT+LNP IGYDNAA +AK AHK+GTTLK++ ++LG+L SE+FD  V+PEKMI PS
Sbjct:  351 ASGNFELNVFKPLIIHNVLNSIRLLSDSCVSFEEHCARGIIPNKEKLNEHLNNSLMLVTALNPHIGYDNAAKIAKNAHKKGTTLKESGIELGLLTSEQFDQWVLPEKMIHPS 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIC (Fumarate hydratase class II OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fumC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.107e-33
Identity = 66/112 (58.93%), Postives = 92/112 (82.14%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 337
            ++G+FELNVFKP+I   +L+S+RLL D+  SF ++C RGI  N+E++++ L+ SLMLVT+LNP IGYDNAA +AK AHK+GTTLK++ ++LG+L SE+FD  V+PEKMI PS
Sbjct:  351 ASGNFELNVFKPLIIHNVLNSIRLLSDSCVSFEEHCARGIIPNKEKLNEHLNNSLMLVTALNPHIGYDNAAKIAKNAHKKGTTLKESGIELGLLTSEQFDQWVLPEKMIHPS 462          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_YEAST (Fumarate hydratase, mitochondrial OS=Saccharomyces cerevisiae GN=FUM1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 5.299e-33
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G FELNVFKP++ + LL+S+RL+ DA+ SF  +CV GI+AN  RI +LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL  +EFD  VVPE M+GP
Sbjct:  377 SQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.299e-33
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            SNGH ELNVFKP+I   +L S+ LL D+  SFV +CV+G++ N  RI+ L  +SLMLVT+LNP IGYDNAA +AK+AHK G TLK+AA KL +L+ EEFD +VVPEKMIG
Sbjct:  352 SNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINDLRDKSLMLVTALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEEEFDKIVVPEKMIG 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.014e-32
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ NRE+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  351 SQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIGP 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_HELPJ (Fumarate hydratase class II OS=Helicobacter pylori J99 GN=fumC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.486e-32
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ N+E+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  351 SQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNKEKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDQFVVPEKMIGP 461          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMC_RALSO (Fumarate hydratase class II OS=Ralstonia solanacearum GN=fumC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.652e-32
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            ++G+FELNVF+PMIA   LHS RLL D   SF  +C  GI+ NRERI++L+  SLMLVT+LNP IGYD +A +AKKAHKEGT+L++AAL LG + +E+FD  V PE+M+G
Sbjct:  351 ASGNFELNVFRPMIAYNFLHSARLLADGMRSFNDHCAVGIEPNRERIAELVQRSLMLVTALNPHIGYDKSAQIAKKAHKEGTSLREAALALGYVTAEQFDAWVRPEQMVG 460          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC1_BRAJA2.810e-3462.16Fumarate hydratase class II 1 OS=Bradyrhizobium ja... [more]
FUMC_METEA8.176e-3462.50Fumarate hydratase class II OS=Methylobacterium ex... [more]
FUMH_CAEEL1.395e-3361.26Probable fumarate hydratase, mitochondrial OS=Caen... [more]
FUMC_LEPIN3.107e-3358.93Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_LEPIC3.107e-3358.93Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMH_YEAST5.299e-3363.06Fumarate hydratase, mitochondrial OS=Saccharomyces... [more]
FUMC_RICFE5.299e-3362.73Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMC_HELPY2.014e-3260.36Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_HELPJ4.486e-3259.46Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_RALSO7.652e-3260.00Fumarate hydratase class II OS=Ralstonia solanacea... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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